Bidens hawaiensis: 143561147
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Entry
143561147 CDS
T11418
Name
(RefSeq) putative NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143561147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143561147
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143561147
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143561147
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
143561147
NCBI-ProteinID:
XP_076905391
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSGILNSGVNGSTTFPDATGRAFTSAFTSQLGSSAADMNHNDAIDVLGLRSINGNYNIPS
MSGAYTSRNSGLNGHLNGVQPPAGSISNGRYAVNNLPAALSLQSGASSLGLSGISNNGVS
GSGLGQSIGNREQIISSMAMGNLVNGGNIGRSLSSGGLNMPGVASRLNLTAPQMVSLLGN
SYSGGGGPLSQNQFQAGNNHLNSMALLSELNRDHSFDMNDFPQLSGHLSSAGGTQRQLGG
LARRQNVSFMQQSQEFSIQNEDFPALPGYKGGNEFPVNMHQKEQLRDNSVSMMQSQQHLP
VGRSSVFNLGGAYSSHQQQQHAPINGGGSYIPANTQDLHFHGSEVARNSGMLATGSRPVN
LSNTVSGGGSYDHLMQQYQHFQKQSQIRLVNPFRDQDVKPTQSTQSAADRFGLLGLLNVI
RMNNPDLTPLALGIDLMTLGLNLNSPDNLYKKFSSPWSDESAKGDPHYSIPECFNTKPPA
PLNQDNFSRFNTETLFYIFYSMPKDEAQLFAANELHNRGWFYHREVRLWFSRAPNMELLV
KTSTYERGCYFCFDPNTWETIRKDNFVVHYEMVEDRPVVPRH
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggatacttaattcaggtgtgaatggctcaacaacttttccagatgccactgga
agagcttttacttcagcatttacttctcagttaggttcttctgctgctgatatgaaccac
aatgacgcaatagacgttctagggttgcgaagcataaatggcaactacaacattcccagc
atgtctggcgcatacacatcaaggaattcaggattaaacggtcatttgaatggtgtacaa
ccacctgcaggaagtatttctaacggacgatatgcagtaaataatcttcctgctgcactt
tctctgcaatctggtgccagctcacttggactttcaggaatttcaaataatggagtttca
gggtcgggtctaggtcaaagtattggcaacagagaacaaattataagctcaatggcaatg
ggtaaccttgttaatggcggaaacattggaaggagtttaagctcgggtggacttaatatg
cctggtgttgcttctcgattaaatctaactgcaccccagatggtatcgctactaggaaat
tcttactctggtggtggagggccactttcacaaaatcaatttcaagcaggaaataatcat
ttaaattcaatggctttattatctgagctgaatcgtgaccattcatttgacatgaatgat
tttcctcaattaagtggtcatcttagctctgctggtggtactcaaagacaactagggggt
ttagcacgtcggcaaaatgttagttttatgcaacaaagccaagaatttagtatccaaaat
gaagattttccagctttacctggatataaaggtggtaatgagtttccagttaatatgcat
cagaaggaacagcttcgtgacaattcagtgtctatgatgcagtctcagcaacatttgcca
gttggaagatcaagtgttttcaatttgggaggcgcatattcatcacatcaacagcaacaa
catgctccaattaatggtggtgggtcctacattcctgcaaacactcaagatctccatttt
catggttctgaggtggctagaaactcgggtatgctagctactggatcaaggcctgtaaac
ttatcaaacacagtgtcaggtggcgggtcctacgatcacctcatgcagcagtatcaacac
tttcaaaaacagtcacagatacgactagtcaacccgtttagagaccaggatgtgaagcca
acccagtcaactcaatctgctgcagaccgatttggattgctaggcttattgaatgtcatc
aggatgaataatcctgatttgaccccacttgctttgggcattgacctgatgacactcggt
ctaaacttgaattcacccgataatctttacaagaagttttcatctccatggtctgatgaa
tctgcaaaaggcgatccccattattccattcctgagtgtttcaatacaaaaccaccggca
cccttaaaccaagataacttctcaagatttaataccgagactttgttttatatattctat
agcatgccaaaggatgaggctcagctgtttgcagctaatgaactgcacaataggggatgg
ttttaccatagagaagttcgcctatggttttcgagggctccaaacatggaactgctagtc
aaaacaagtacttatgagaggggttgttatttctgttttgaccctaacacctgggaaact
attcgaaaggacaactttgtggttcactatgaaatggtggaagatcgaccagtggtcccc
cgtcattag
DBGET
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