Bidens hawaiensis: 143561237
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Entry
143561237 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bhw
Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143561237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143561237
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143561237
Spliceosome [BR:
bhw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
143561237
Complex B
143561237
Complex C
U2 SnRNP specific factors
143561237
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF3006
Motif
Other DBs
NCBI-GeneID:
143561237
NCBI-ProteinID:
XP_076905479
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MSKRKFGFEGFNINKQSTYTFNQPQQPQRLYVPPSSSSRSHDHFEDTDLDNIEYDDVVDA
ENTTAGAGTDDGEIDPLDAFMEGIHQEVRAPPPPKPKAEEKYRDDEEDDPMESYLRAKKD
VALTLASDALHAGYNSDEEVYAAAKAVDAGLLEYDSDDNPIVVDKRKIEPIAALDHGSID
YEPFNKDFYEDKSSISGMSEQEVAEYRNSLAIRVAGFDVPRPIKTFAEAGFSVELMKAIV
KQAYEKPTSIQCQSLPIVLSGRDIIGIAKTGSGKTAAFVLPMVVHIMDQPELAKEEGPIG
VVCAPTRELAHQIYLEAKKFAKVYGIRVSAVYGGMSKLEQFKELKSGCEIVIATPGRLID
MLKMKALNMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKIEKLA
REILTDPVRVTVGEIGMANEDISQEVQVLVSDSEKLNWLLEKLPELIDNGDVLVFGSKKA
TVDEIESQLLQKGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKS
VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLIAAGQNVSMEL
MDLAMKDGRFRSKRDARKGGGKRAKGRGGGNRGVRGVDFGLGIGYNSEPKAASSSGRSSA
VNSLRSGVMAQFKSSFVAASSNSQNQGLLNSNKKMVLPGFVSGGSIGGDVRPPSTTTSSP
SLTHMPAGNASSQNTGHRSHGSSDRSKDRPRERRRPSGWDR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtaagttcggattcgaaggcttcaacatcaacaaacaatccacctacacc
ttcaaccagcctcaacaaccccaacgcctctacgtcccaccatcatcctcctctcgctcc
cacgaccacttcgaagacaccgacctcgacaacatcgaatacgacgatgtcgtagatgcc
gaaaacaccaccgctggagccggaacagacgatggcgaaatcgacccgctggacgccttc
atggaaggcattcatcaggaggtgagggccccaccgcctccgaaaccgaaggcggaggag
aagtatagggatgatgaggaggatgatcccatggagagttatttgagggcgaagaaggat
gttgcgttgacgttggcgtctgatgcgctgcacgctgggtataattcggatgaggaggtg
tatgcggctgctaaggcggtggacgctgggttgttggagtatgattcggatgataatccg
attgttgttgataagaggaagattgagccgattgccgcgttggatcatggttcgattgat
tacgaaccgtttaataaagatttttatgaagataagtcatccatttcaggtatgagtgag
caagaggttgcggagtatcgaaatagtttggcgattcgtgttgcaggctttgatgttcca
aggccgataaagacatttgcagaagctggattctctgtagagttaatgaaagcgattgtg
aaacaagcttatgaaaagcctacttctatacaatgtcagtctttgccgattgtgttgtct
gggagggatattattggcatcgcgaaaactggttcgggtaagacggctgcgtttgttctt
ccgatggtagttcatattatggatcaaccggagttggctaaagaggaggggccgatagga
gtagtttgtgcacctactagagaattagcgcaccaaatatatttagaggcgaagaaattt
gcaaaagtgtatggtattcgtgtgtctgcggtttatggtgggatgtcgaaacttgagcag
tttaaagaattgaagtcggggtgtgagattgttattgctacacctgggaggttaatagac
atgttgaagatgaaggcgttgaatatgttaagagctacttatttggttcttgatgaggct
gatagaatgtttgatcttggatttgaaccgcagataagatcaattgtaggtcaaattcgg
cccgatcgccaaacattgcttttttcagcgacgatgcctagaaaaattgagaagcttgca
agggaaatacttactgatcccgtgagagttaccgttggtgagattgggatggctaatgag
gatatttctcaagaagttcaagtacttgtttctgattccgagaagttgaattggctgctt
gaaaagcttccagaacttattgataatggcgatgtgttggttttcgggtcaaagaaggca
acggttgatgagatagaaagtcagttattgcaaaaagggtttaaagttgctgcgcttcat
ggtgataaagatcaggcgtctcgtatggagacattgcagaagtttaaaagtgggatatac
catgttcttgttgcaactgatgttgctgcgcgtggtcttgacattaaatcgattaagtca
gtggttaattttgatattgctagagatatggacatgcatgtgcatagaattgggagaaca
ggtcgggctggtgataaagatgggactgcttacactcttatcacacataaagaggcccgt
tttgctggagagttggtcaacagtttgattgcagctggtcaaaatgtgtcgatggaactt
atggaccttgctatgaaggatggaaggtttagatccaagagagacgctagaaaaggaggt
gggaaaagggctaaaggaaggggaggtggcaatcgaggtgtgcgtggtgtggactttggc
ttggggataggatacaattcagaacccaaagctgcctcatcaagtggtcgtagttcagct
gttaattcacttagatcgggagttatggctcagttcaaaagcagctttgttgcagcttcg
tcaaattctcaaaatcaaggtttgctcaacagtaacaagaaaatggttttacctggtttt
gtttcgggtggttccataggtggagatgtacgtcctccctctacgaccaccagttctcca
agtttgactcacatgccagctggcaatgcctctagtcagaacacaggacatagaagccat
gggagttctgatagatcaaaagatcgtcccagagaaaggaggcggccttctggatgggac
cgatga
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