Bidens hawaiensis: 143561662
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Entry
143561662 CDS
T11418
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143561662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143561662
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143561662
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143561662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
143561662
NCBI-ProteinID:
XP_076905791
LinkDB
All DBs
Position
Unknown
AA seq
829 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEHEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKAKPPRLTHLESSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKEFIDDYVERNQEDFDEFEDVDMLYNTLSLDMVDA
LEDLVSIVPPSLVKGVGATGAALSMKNVVSSPSVQSSVVASVQDQVEETVSQDNSSDHGP
KTPAPKTSAILSSSPTPAGSHATTPVAVAASSILPGQSPVKGILENTPSAVPSSPVNKEE
EVGGFPGRKASPAFNIGRGSLTGQPSVTTSNIPTNIVSPSVSERVGGMVHGSPVSSLSNR
MMMSQGGAKTSDGGDNGSVGDASGMTPRVYSPSGLQWRPGSPFQNQHDGARARPEIAPDQ
REKFLQRFQQVQQQTQNNNTLLNMPPISGNHKQFSGQQSPLLQQFNSQSSTVLPQGGLGG
ALSAGSNNVTSAQQPSLIHLQAGQQTFMPAGSKDTEIGNAKTDDMEQQQSLVDDSADPAQ
TAEPNKNAANEEDSKASYALDSKVSDVDLSPGQPLQPNQSGTLGVIGRRSLSYLGAVGDN
LGGLAVNLGGTHDQQYNLQMLEAAFYKLPQPRDSERAKSYTARHPAVTPQSYPQVQAPIV
NNPAFWDRLGSDNIGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEP
EFATDDFEQGTYAYFDFHIGNDEMQNGWCQRIKTDFKFEYNFLEDELIV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtagaaagcttcaaggcgagatcgatcgagtattgaagaaagtgcaagaa
ggcgttgatgtattcgacagcatatggaacaaggtatacgacacggataatgcgaatcag
aaggagaagtttgaggcggatttgaagaaggagattaagaagctgcagaggtacagagat
cagattaagacatggattcagtccagtgagatcaaggataaaaaggttagtgcctcttat
gagcaggctttaatggatgcacgcaagcttattgaacatgaaatggaacggtttaagatt
tgtgaaaaggagacaaagacaaaagctttctccaaggaaggcctgggacagcagcctaaa
acagatccgaaggagaaagccaagtcagagactagagactggttgaacaatacggtgtct
gagctggaatctcaaattgatagctttgaagctgagatggaggggctgtccgttaagaaa
ggaaaggcaaaacctcctagactgacacatttagaatcatcaattactcggcacaaggct
catataatgaagctagagttaatattgaggctgctagataatgacgaattgagtcctgag
caagtcaatgacgttaaggaattcattgatgattatgtggaacgaaatcaggaggatttt
gatgaatttgaagatgttgatatgctatacaacaccttatcattggacatggtagatgca
ctagaagatctggtttccattgtgccacctagccttgttaagggtgttggtgctactggt
gctgctctaagtatgaaaaatgtcgtgtcttcaccttctgtacagtcatcggtggttgct
tctgttcaagatcaagtagaggaaaccgtgtctcaagacaacagttcagatcacgggcca
aagacaccagctccaaaaaccagtgcaatcttgtcttcttctccaacaccagctggcagt
catgcaaccacccctgttgctgttgctgcttcttcaatccttccaggtcaaagtcctgtc
aagggtattttagaaaacacaccctccgccgttccttcctcgcctgtaaacaaggaagaa
gaagttggtggatttcctggtcgtaaagcatctccagctttcaatattggtagaggcagt
ttgaccggtcaaccctcagttactaccagtaatattcctacaaacattgttagtccttca
gtttctgagagagttggtggcatggtgcatgggtcaccagtttcatctttgagtaacaga
atgatgatgtcacaaggtggagctaaaaccagtgatggcggtgacaatggcagtgtcggt
gatgctagcggtatgacacctagagtctactcaccttctggattacaatggaggcctgga
agtccttttcaaaatcagcatgatggggcacgtgctagacccgaaattgcaccagatcaa
agagagaagttcttgcagcggtttcaacaagtgcagcaacaaactcagaataataatact
cttcttaacatgcctcctatttctggaaaccataagcaattctcaggacagcagagtcct
cttttgcaacagttcaattctcagagttcaacagtgttgccacaaggtggattaggtgga
gcattgtcagcaggttctaacaatgtcacatctgcacaacaaccaagtttgattcatttg
caggctggtcaacaaacatttatgcctgctggatctaaagatactgaaattggcaatgca
aagactgatgacatggagcaacagcaaagcctggttgacgactctgctgatcctgctcaa
actgctgaacctaacaagaatgctgctaatgaggaagattcaaaggcgtcatatgcatta
gattcaaaggtgtctgatgttgacctctcacctggtcagcctttacaaccaaaccagtct
ggcacccttggtgttataggtagaagaagcctttcctacctcggtgcagttggagacaac
cttggtggcttagctgtcaacttaggtggcactcatgatcagcaatacaatctacaaatg
cttgaagctgccttctacaaacttccccaaccccgcgactctgaaagggccaagagttac
actgcaagacaccctgctgtgacccctcaaagctatcctcaggtacaagctccgattgtg
aataatcccgccttttgggatcgtcttggatctgataatattgggaccgataccttattt
tttgcattctactatcaacagaacacttatcaacagtatttagctgctaaagagttaaag
aagcaatcatggagataccataaaaagtacaacacgtggtttcaacgacatgaggaaccg
gaatttgcaactgatgattttgagcagggaacgtatgcgtacttcgattttcatattggc
aatgatgaaatgcaaaatggatggtgtcagagaatcaagacggatttcaagtttgagtac
aactttctggaagacgagctgattgtgtaa
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