Bidens hawaiensis: 143565559
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Entry
143565559 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03013
Nucleocytoplasmic transport
bhw03015
mRNA surveillance pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143565559
09122 Translation
03013 Nucleocytoplasmic transport
143565559
03015 mRNA surveillance pathway
143565559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143565559
03041 Spliceosome [BR:
bhw03041
]
143565559
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143565559
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143565559
Spliceosome [BR:
bhw03041
]
Complex C
Other components
EJC/TREX
143565559
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143565559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
143565559
NCBI-ProteinID:
XP_076908619
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MGEVKDNEYEEELIDYDDDEKAPDSVNGKSETAVKKGYVGIHSSGFRDFLLKPELLRAIV
DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCH
TRELAYQICHEFERFSRYLPDLKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRVLGLAR
DKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK
FMQDPMEIYVDDEAKLTLHGLVQHYIKLGEMEKNRKLNDLLDALDFNQVVIFVKSVSRAA
ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGLQRILVATDLVGRGIDIERVNIVIN
YDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQIDTS
TYMPA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagttaaagataacgagtacgaggaggagcttattgattacgatgacgatgag
aaagcgcctgactccgttaacggaaagtccgagaccgccgtcaaaaagggctatgttgga
attcacagttcaggcttccgggacttcttgctgaaaccagaacttcttcgagctattgtt
gattctggatttgaacatccttcagaagttcaacatgagtgcataccacaagctattcta
ggaatggatgtcatatgccaagcaaaatctgggatgggaaaaacagctgtttttgttctg
tctacacttcaacaaattgagcctgtggcgggtcaagttgctgcccttgttctttgccac
accagagaattagcttatcagatttgccatgagtttgaaaggttcagtagatacttgcct
gatcttaaagttgctgtcttttatggtggtgtgaacataaagatccataaggagctactg
aagaatgaatgtcctcatattgttgttggaactcccggaagagtattagggcttgctaga
gataaggaacttggattgaagaacgtgaggcattttattcttgatgagtgtgacaaaatg
cttgagtcactcgacatgagaagagacgtgcaggagatttttaagatgacacctcatgac
aagcaagtaatgatgttctctgctacactaagcaaggagattcgaccagtttgcaagaag
tttatgcaagatccaatggaaatttatgttgatgatgaagccaaattaactcttcacggg
cttgttcagcattacatcaaattgggtgaaatggaaaaaaaccgcaagctaaatgacctt
ctagatgccttggattttaatcaagtagtcatctttgtcaagagtgtaagcagagctgct
gagctcaataaattacttgtggagtgcaacttcccatctatttgtatccattctggaatg
tctcaagaagaaaggttgacgcgctacaagggttttaaagaggggttacaaagaatcctt
gttgcaactgatttagttggaaggggcattgacattgagcgagttaatattgtcataaat
tatgacatgccagattctgctgatacttatctgcacagggttggaagagctggcaggttt
ggcactaagggtcttgcaatcacttttgtagcatctgcttcagactctgatgttctcaac
caggtgcaggaaaggtttgaggttgatataaaggagcttccagagcagatcgatacttca
acctacatgccggcataa
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