Bidens hawaiensis: 143566530
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Entry
143566530 CDS
T11418
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143566530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143566530
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143566530
Spliceosome [BR:
bhw03041
]
Complex C
Other components
Step II factors
143566530
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
AAA_22
HA2_C
DEAD
AAA_19
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
ABC_tran
AAA_16
ATPase_2
NAT10_TcmA_helicase
nSTAND3
AAA_29
nSTAND6
NACHT
FtsK_SpoIIIE
NB-ARC
SRP54
T2SSE
Flavi_DEAD
NPHP3_N
nSTAND1
Dynamin_N
Sigma54_activat
DAP3
Motif
Other DBs
NCBI-GeneID:
143566530
NCBI-ProteinID:
XP_076909321
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MASKQLPILQFEEKILHTVDQNPVVVVIGETGSGKSTQLSQILHRSGYTNSGAIAVTQPR
RVAAVSVSRRVAQELDVRLGEEVGYAIRFEDRTSEKTCIKYLTDGVLLRESLSDPELKQY
SVIILDEAHERSLNTDILMGLMKRLIKLRASNLKVLITSATLDGEKVSKFFSDCPILNVP
GKLFPVEISYSAEQPKSYIESSLRKAIDIHVNEPEGDILIFMTGQDDIEKLVSKLEEKIQ
SLEVGSCLDALVLPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDS
GYVKQRQYNPSSGMYSLDVVQISRVQANQRAGRAGRTRPGKCYRLYPLAVYHDDLLDATV
PEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSLESLQDALKQLFLIDAIDENGAITR
IGKTMAELPLEPSLARTLIEANENDCLTQALTVAAMLSVEGTLLHGRSKSSTDKKRKPPP
SELPDGLGLGDHIQLLQIYELWDQTDYSIDWCKDNNLQIRGMLFAKDVRKQLSQIMQKIA
KGSLDVKRKERRRDREHDYKSLRKSLCVGYASQLAERMIRHNGYRTLGFKSQLVQVHPSS
VLRTDDEGMLPNYVVYHELISTSRPFMRNVCEVEMQWVTPILQKLDKIYVNKLSGGAYQP
IENTQENPNIPIKEVNNVAPADDSSSRIQAARDRFLARKAGK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaagcagcttccaattctgcaattcgaagagaagatactgcacacggtggat
cagaatccggttgtggtggtcatcggagaaaccggttccggcaaaagcactcaactctct
caaattctacaccgaagtggttacactaactccggcgccatcgccgtcactcagcctcgc
cgtgtcgccgccgtatccgtctctaggagggttgcacaggagcttgatgttcgattgggt
gaagaagttggttatgccataagattcgaggacaggacttcagagaaaacttgtattaag
taccttactgatggagtgcttcttcgtgaaagtctttctgaccctgagcttaaacagtat
tcagtgataatattggatgaagctcatgaaaggagtctaaacacggatatattgatgggg
ttgatgaagcggttgattaaattgcgtgcctccaatttgaaagtgttgatcacttcagct
actcttgatggtgaaaaggtgtcaaagtttttctctgattgcccgattctaaatgttcct
gggaaattgtttcctgtagaaatctcttatagtgcagagcaaccgaaaagttatatcgag
tcttctttgagaaaagctattgatatacacgttaatgaacccgaaggggacattttgata
tttatgaccgggcaggatgacatagagaaattggtatctaaattggaggaaaagattcaa
agccttgaggtaggatcttgtttggatgcattggtcctcccgcttcatggctctttgcca
cctgaaatgcaggtgcgagtatttagtcctccgcctccaaattgtaggcgttttattgtg
gctacaaatattgctgaaacctcattgactgttgatggtgttgtgtatgtcatcgactct
ggctatgtgaagcaacggcaatataatccatcaagcggaatgtattccctcgatgttgtt
cagattagcagggtgcaagccaaccaacgagcagggcgagctgggagaacgagacccggg
aagtgctatcggttatacccattggctgtttaccatgacgatttgctggatgctactgtg
cctgaaatacaacgctcttctctagctggaagtgttctttatttaaaatcacttgacctt
cctgatattgatattcttaaatttgactttcttgatccaccttcacttgagtctttacaa
gatgctcttaagcaactgtttttgattgatgccatagatgaaaatggtgccatcacgagg
ataggaaaaactatggcagagcttcctttggaaccttcattagcaaggactttaattgag
gcaaatgaaaatgattgtttgacccaagctttgactgtagctgctatgctatcggttgaa
ggcacactgcttcatggacgaagtaaaagcagcacagacaaaaagaggaagcctcctccc
tcagagcttcctgacggtttgggattgggtgatcacattcagttacttcaaatctatgaa
ctctgggaccaaactgactatagtattgactggtgcaaagataacaacttacagatacgg
gggatgctattcgccaaagatgtccgtaaacagctgtctcaaataatgcagaaaattgca
aaagggagcttggatgtaaagagaaaggaaagacggagagatagagaacatgattacaag
agtttaaggaagtctctgtgtgttggatatgcaagccagctggctgaacggatgattcgt
cacaatggttatcgaactcttggcttcaagtctcagcttgttcaggtgcatccgtcttct
gtattgcgaacagatgacgaaggaatgcttccgaattatgttgtataccatgaacttatt
tccacttcacgcccgtttatgcgtaatgtttgtgaagtagagatgcaatgggttactcca
atattgcaaaagcttgacaaaatatatgtcaacaagctcagtggtggagcctaccagccc
atagagaacacccaagaaaacccgaatattcccattaaagaggttaacaatgtggcccct
gcagatgactccagcagtagaatacaagcagcccgtgaccgatttcttgctcgtaaagca
ggcaaataa
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