Bidens hawaiensis: 143571049
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Entry
143571049 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143571049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143571049
03036 Chromosome and associated proteins [BR:
bhw03036
]
143571049
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143571049
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
143571049
mRNA degradation factors
5'-3' decay
Decapping complex
143571049
Chromosome and associated proteins [BR:
bhw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
143571049
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143571049
NCBI-ProteinID:
XP_076912682
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MSNNNNNNNNNNNNNRRYPPGIGNGRGYDGGGGGNFQPNPNYHHHHHQQPRNPNQFHQPR
HQSHYAPKQQPPPQQQQQQQHQQWLRRNPNPTPVNEVDKSVYSDGGTIDSSSQDWKAKLN
VPAADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDIL
ARAKNGTGKTAAFCIPVLEKIDTDKNIIQAVILVPTRELALQTSQVCKELGKHLQIQVMV
TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGICKLSECAMLVMDEADKLLSPEFQP
SVEELIGFLPKQRQILMFSATFPVTVKDFKDRYLKKPYVVNLMDELTLKGITQFYAFVEE
RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFH
DFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLI
TYEDRFNMYRIEQELGTEIKQIPPQIDQAIYCA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataataataataataataataacaacaacaacaacaaccgccggtatccaccc
ggtatcggcaacggccgcggctacgacggtggcggcggcggtaacttccaaccaaaccct
aattaccaccaccaccatcatcaacaacctcgaaaccctaatcagtttcaccaacccaga
caccaatcacattacgctcctaaacaacaacctccaccacaacagcagcagcagcagcag
caccaacagtggttgagacgaaaccctaaccctactcctgttaatgaagttgacaaatca
gtgtattctgatggcggcaccatcgattcaagctctcaagactggaaggccaaactgaat
gtacctgcagcagatacccgctacaagactgaggatgtcactgctacaaaaggaaatgaa
tttgaggattattttttgaaaagggagctacttatggggatctatgaaaagggttttgaa
agaccctcacctatacaggaagaaagtatcccaattgcactgactggaagtgatattctt
gcaagagccaaaaatggaactggaaagacagcagctttttgtattccagtacttgaaaag
attgacacagataaaaatattattcaagctgtcatattagttcccaccagagaattagct
ctacaaacatcacaagtctgcaaggaactaggaaaacatttacaaattcaagtgatggtc
actactggaggaacaagtttaaaagatgatataatgcgtttatatcaacccgttcatttg
ttggttggtacacctggaagaattcttgatcttaccaaaaagggaatatgcaaattgtct
gaatgtgcaatgttggttatggacgaggctgataaactgttgtccccagagtttcagcct
tcagtggaagagctaattggatttcttcccaaacaaagacaaattctgatgttttcagct
acgtttccagttacagtcaaagatttcaaggacagatacctgaaaaaaccatatgtggtt
aatttaatggatgaacttactcttaaaggtatcacacagttttatgcttttgtagaagaa
aggcagaaggttcattgtctcaatactcttttctctaagctgcaaatcaatcaatcgata
atcttttgcaactcggtcaaccgagtcgagctattagctaagaaaattacagagctgggt
tactcttgtttctatattcatgctaaaatgttgcaagatcacaggaatcgtgtctttcat
gacttccgcaacggtgcatgcaggaacctcgtttgtaccgatctgtttacaaggggtata
gatattcaagcagtgaatgttgtgattaattttgattttcccaagaatgctgaaacatat
cttcacagggtgggacgatctggaaggtttggacatctagggttagctgtgaatttaata
acttatgaagatcgctttaacatgtataggattgagcaggagcttggaaccgaaataaaa
caaattcctccgcaaattgatcaagccatttattgcgcttga
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