Bidens hawaiensis: 143572839
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Entry
143572839 CDS
T11418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143572839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143572839
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143572839
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143572839
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143572839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
DUF8205
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
143572839
NCBI-ProteinID:
XP_076914002
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MEMDSSSRGRQFDRSSRDMKKPRLNNNNGRLVAAGFRQSAERERDLENSGGGYHPQALSQ
LQLQHQELVDQYMTALAELTFNSKPIITNLTIIAGENVQAAKDIAAAICTNILEIPSDQK
LPSLYLLDSIVKNIGRDYIRYFAARLPEVFCKAYKQVDSVVRSGMRHLFGTWKGVFPPQS
LQLIERALGFQSAANISSSLEPDSQSQRPARSIHVNPEYLEARQKLQQSSMAKVPTIDTK
LINTPEDINSQDRTSANITSMRAHTNSRLKNIQQAQSSVEGSIRENEREIFNEKGFDNNR
NGFSTKCENPNSSTKKPANADGKLQPANYIAVKKFGQLNRSWKNSDEEEYVWGGMNSRLP
NSVKSDGSSKRDPRSPPEPEKTGFENRFQKSQGLSANGVSTLVKSILKPSSLDGFPPSAV
TGPQRHTPAPSIPIHSSRILSNITAQDNKPTVSRGQKNTGPASHSSQDSFHTDGSQKTRD
LLHSHTKKHEATQADLPPVTSILSTLVAKGWISASKPDPPSDEKIQKDENTPHKGPAPEK
RKSPLSKDDPSPTEDVKSVIGFEFKPDVIRRSHTAVISQLIIDELPHQCHICGLRFKLME
RFDRHIEWHTLNDPELNTLNKSSRRWFTSSEDWVNGKLEMRSGDQIMGPVLIDGEQMVVA
DESQCACVLCGEVFDDFYFQESGKWMFRRAVYLNIEDGDIGNTYGPIVHAHCVSENSLSD
LGLLSDVEREGK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggagatggatagtagttctagaggtaggcaatttgatagatcatctagagatatgaag
aaaccgagacttaataataacaacggtaggctggtggcggcagggttccggcagagtgcc
gagagagagagagatttagaaaacagtggaggaggttatcatccgcaggcgttatcgcag
ttgcagctgcagcatcaggagctggtggatcagtacatgacggcgttggcggagctgacg
tttaactcgaagccgattattacgaatttgacgattattgctggagagaatgtgcaggct
gctaaagatatagctgctgctatctgcactaatattcttgagatcccgagtgatcaaaag
ctgccatcactataccttctcgacagtattgtgaagaatattggcagagattacatcaga
tactttgctgccagactacctgaggttttctgcaaggcatataaacaggttgattcagtt
gtacgttccggaatgcgccatcttttcggtacttggaaaggtgtatttccgcctcaatca
ctacaacttattgagagagctcttggttttcaatcagctgcaaacatatcatcttcttta
gaacctgactcgcaatctcaacgccctgctcgaagtattcatgtgaatcccgagtatttg
gaggctagacagaaacttcaacagtcgagtatggcaaaagttccaactattgacacaaag
ctgattaacacaccggaggatattaatagtcaagacagaacatcagccaatattacttct
atgagggcccacacaaactctcgcctcaagaacattcagcaggcacaaagtagcgtggag
ggcagtattcgtgagaatgaacgtgaaatatttaatgaaaagggatttgacaataataga
aatggcttttccacgaagtgtgaaaaccctaattcctcaaccaagaaacctgcaaatgca
gatggcaaattgcagcctgcaaattatattgcagttaagaaatttggtcagttaaatagg
agctggaagaattcagatgaagaagaatacgtgtggggtggtatgaactcacggttaccg
aattctgttaaatccgatggtagctcaaagcgggacccgaggtcaccccctgagcctgaa
aagacgggttttgagaatcgtttccaaaaatcacagggtttatctgccaacggggtatcc
acattggttaaatctatcttaaagccctcgagtctagatgggtttcctccaagtgcagta
acgggcccgcaacgacacactcctgcaccctcgatcccgattcattcaagtagaatactg
agtaatattactgcccaagataataaacccactgtatctcggggacagaaaaacacagga
cctgctagtcattcttctcaagattctttccacaccgatggttctcaaaaaacacgggac
ctgctgcattcacatactaaaaagcatgaggccactcaagcagacttgccacctgtcacg
agtattttgagtacactggttgccaaaggctggatttctgcatcaaagcctgaccctcca
tctgacgaaaaaatacaaaaagatgaaaatacccctcacaaaggacctgcaccagaaaag
aggaagtcacctcttagtaaggacgacccatctcccaccgaagatgtaaaaagtgttatt
gggtttgaatttaagcctgatgtgattcggaggtcgcataccgctgtaataagtcaactc
atcatcgatgaacttccacaccagtgtcacatatgcgggttacggtttaaacttatggaa
cggtttgaccgacacatcgagtggcatacacttaatgaccctgaattgaacacgctcaat
aaatcatcgaggaggtggttcacaagttctgaagattgggttaatgggaagcttgaaatg
cggtctggtgatcagattatgggtcccgtgctgattgatggtgagcagatggttgttgct
gatgaaagtcagtgcgcgtgcgtgttgtgtggtgaggtgtttgatgacttttatttccaa
gaatcgggtaaatggatgtttagaagagctgtgtatcttaacatcgaagacggggatatt
ggtaatacttacgggcccatagtgcatgcacattgtgtatcagaaaattctctttctgat
ttgggattgcttagtgatgtcgaaagagaaggcaagtaa
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integrated database retrieval system
