Bidens hawaiensis: 143573367
Help
Entry
143573367 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143573367 isoform X1
KO
K06100
symplekin
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143573367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143573367
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143573367
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143573367
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
143573367
U7-dependent histone pre-mRNA processing factors
143573367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
143573367
NCBI-ProteinID:
XP_076914378
LinkDB
All DBs
Position
Unknown
AA seq
1375 aa
AA seq
DB search
MMVGMISMERFSGLIESAKFSSDVPSKLETLRKLKDEFILAEDPHLLTHFFPHLLDLHTD
RSSPVRRFVAEIAGDVGLNNIDLLPDIVPLLLTLLRDGTPAVARQAITCGISLFRRALMK
IAIQGLYSSEIDESLESSWLWILKLKDEIYTMAYQPETDGRKLLALKFVEAVTLLYTADP
SASTEPPENHTSGDEFNIAWLRGGHHILNVAELSAEASKNLGVLLDQLRYPAVKSLSNMV
VIVLIKSFSEIAKKRPSFYGRILPVLLGLDPSSSAVKAGRVSGVHHALKNAFLTCLKCTH
PGAAPWRDRLVSSLREMKAGELAEEALQQVLRGNSPIRQDIKPSIEAYDAVHSTAVRKRP
ELQDANDLNKDDDVPGKRVKPTPNLNEDMKGNNGNSSKPTTTKQNVDNGPVQQLISMFSS
LVAQGEQSAAMLEILISSISADLLAQVVMANMPNLPLVCPKEDGEKESLNTGSHPAAQSN
NLSAYLTDIISKSTNSQVTHSAPDTHIDEQKPEMEVELPAANDSDVADFTSNQVLVPSGP
PVSYNLPSISIVGLGIPSEDIDIGELEDGIPGLESSSKNDGMPGLESSSKNDGMLEITKM
DTSPVICADLEENSQQQITKMDTSSVDIVPSVSTDKSDELSPKAAMAETNSNNSSTATSL
QLTPKIVLPKISAPVVNLTDEQKDNIQKLAFTHIIDAYKHIAVSGGSELRFSLLSYLGVE
FPLELDPWKLLQTHILSDYTNHEGHELTLRVLYRLFGEAEADHDFFSSTTATTVYEMFLL
KVAEALRDSFPPSDKSLSRLLNEVPYVPKSVIKLLESLCVPGNSDKDEELHSGDRVHQGL
SIVWSLILHRPPTRDACLKIALQSAVHHLEEVQTKAIRLVANRLYPIPSISQQIEDFAKE
KLLSAMNGDNLITDGSNTELAVDTQMERPLTESVSAVSKDSSSEAGQLSTSENIPSSSVV
DAQRCMSLYFALCTKKHSLFRQLLVVYKNMSKAAKQAISVQIPKLVRTIGASSQLLEIIA
DPPAGSENLLMQVVQTLTDGAVPSPELIATIKKLHDTKLKDAEILIPVLPFLPKDEILQI
FSCFVSLPSDKFQAALARILQETSQGGSVLTPAEVLIAIHGIDPEKDGIPLKKVTDACNT
CFQQRQIFTQQVLAKVLNQLVEQIPLPMLFMRTVIQTIGAFPSLVDFIMEILSRLVSKQI
WKNQKLWVGFLKCAQLTKPQSFSVLLQLPPAQLEIALNKQPVLKGPLASYASQPDIRTSL
PRSILVVLGIKQTDSPGQTTQSQTLSQAQSQTQSQVQSHTQSQAQSHMQSQAQSHTQSQS
QSQSHTPSQAQSHTPTQAQSQVQSQTQSLVQSQTADTGNSVKDAVTEEPKESSSS
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgatggttggaatgatatcgatggagaggttctctgggctgattgagtcggccaaattc
tccagcgatgtcccgtcgaagctggagacgttacgtaagctcaaagacgaattcatcctg
gcagaagaccctcacttgctcactcacttcttccctcacctccttgatctccacaccgat
cgctccagtcctgttcgcagattcgttgcagagattgctggtgatgttgggttgaacaat
atagatttattacctgatatagtacccctattgttaactctcttaagagacggtacgcct
gcggttgctagacaggcgatcacatgtgggatcagtttgttccgacgtgctcttatgaaa
attgcaattcagggtttgtattcaagcgagattgatgagtctcttgagtcatcatggtta
tggattttgaagcttaaagatgaaatatatacaatggcataccagccggaaaccgatggg
agaaagttgcttgcgttgaaattcgttgaagcagtaactcttttatatacagctgatcct
agtgcttctactgaaccacctgaaaatcacacttctggagatgaatttaacatcgcatgg
cttcgtggtggccatcacatacttaatgttgctgagttatcagctgaagccagtaagaat
ttgggtgtgttgcttgatcagcttaggtatccagctgtcaaatcacttagcaatatggtt
gtcatcgttttaattaagagcttttcagagattgctaagaaaaggccttcattttatggg
cgtattcttcctgttttacttggattggatccatcaagttctgctgtgaaagctggtcgt
gtttctggtgtccatcatgctttaaagaatgcttttctcacctgcttaaaatgcacacac
cctggtgctgcaccgtggcgagatcgtttagtttcatcacttagggaaatgaaagccggt
gagttagctgaagaagctctccagcaggttctcaggggtaattcaccaattagacaggat
ataaaaccctcaatagaagcatatgatgctgtgcactccactgcggttaggaaaaggcct
gaactacaggatgctaatgatcttaataaagatgatgatgtacctggaaaacgtgtcaaa
ccgacacctaatttgaacgaggacatgaagggcaataatgggaattcttcaaaaccaact
acaaccaaacagaatgtagacaatgggcctgtgcagcagcttatttctatgttcagttca
ttagttgcacagggtgaacagtctgctgcaatgctagaaattcttattagtagcatttca
gccgatttactagctcaagtagttatggccaatatgccaaatcttcctctagtttgccct
aaggaagatggtgagaaagagtcattgaacactgggtctcaccctgctgcacagagtaat
aatctgtctgcatacttgacagacataatatcaaaatccaccaactctcaagttacacat
tctgctcccgacacacacattgatgagcagaaacctgaaatggaggttgaactgcctgca
gcaaatgatagtgatgtggcagattttacttctaatcaagtcttggtgccttcgggccca
ccagtgtcttataatttgccttctatatctattgttggtttaggtattccatctgaagat
atagatataggggaacttgaagacggcatacctggtctagaatcatcatccaagaatgat
ggaatgcctggtctagaatcatcatccaagaatgatggaatgctcgaaattaccaaaatg
gacacgtcaccagttatttgtgctgacttggaagaaaacagtcaacagcaaattaccaaa
atggacacatcatcggtggatatagttccttcagtgtctactgacaaatctgacgaactt
agtccaaaagcagccatggcagaaacaaacagcaataattcctcaactgcaacttctctt
cagttaacacctaaaattgttctcccaaaaatttctgcacctgttgttaacctcactgat
gaacagaaggacaacatacagaaattagcctttacacacattattgatgcttataagcat
atagcagtttcaggtggctcagagcttcgtttttctttactttcatatctcggagttgag
tttcctttggagttggacccttggaaacttcttcaaacacacatactctcagattataca
aaccatgagggccatgagttaaccttacgtgttctctatagattatttggagaagcagaa
gcagaccatgacttcttttcttcaacaacagcaactaccgtttatgaaatgtttcttctg
aaagtggcagaagcacttagagattctttcccaccctctgacaaatctttgagtagattg
ctaaacgaagttccgtacgtaccaaaatcagttattaaactattagagagcttgtgtgtt
cctggaaacagtgataaagatgaagaactgcacagtggagatagagtgcatcaaggcctt
agcatcgtttggagcttaattcttcatagaccacccactagagatgcctgcttaaaaatt
gctttacagagtgcagtgcatcacttggaggaagtacaaacaaaggcgatacgtctggtt
gcaaacaggctttatcctataccctccatttctcagcaaattgaagattttgcaaaggaa
aagctactatctgcaatgaatggtgataatttgattactgatggctccaacaccgaatta
gcagtggacacacagatggaaagacctttaactgaatcagtaagtgctgttagcaaggat
agttcctctgaggctggtcaactgtctacatcagaaaacattccatcttcttcagtagtc
gatgcacagcgatgcatgtcactgtattttgccctttgcacaaagaaacactctcttttc
cgccaactgttagtcgtctacaagaacatgtcaaaagcagcaaaacaggcgatcagtgtt
caaatccctaaactagttcgcacgattggcgcatcatctcagcttcttgaaattattgca
gatccgccagctggaagtgagaatctactgatgcaggttgtgcaaacactaacggatggg
gcagttccatctcctgaattgatagctaccattaaaaagttacatgacacaaagttaaag
gatgctgagattcttattccagtattaccattcctgccaaaggatgagattcttcagatc
ttttcttgttttgttagtcttccatctgataaatttcaggctgcactagcccgtatcttg
caggaaacatctcaaggtggttcagttcttactccagcagaagttctgattgctattcat
ggaattgatcctgaaaaagatggaattcccctcaagaaggttacagatgcatgcaacact
tgctttcagcaacggcagatatttactcaacaagttctagcaaaagttttaaatcagctg
gtggagcagatacctctaccaatgctgttcatgcggacagtaatacagacaattggtgca
tttccctccctggtcgattttattatggagattctatctcgtcttgtgagcaagcagatt
tggaaaaatcagaagctctgggtaggattcttgaaatgtgctcagctaacaaagcctcaa
tctttcagtgttctactccagcttcctcctgcacagctggaaattgcattgaataaacag
cccgtactaaagggtcccttggcttcctacgcgagccaaccagacattcgaacatcactt
ccaaggtctatactggtggttcttggaatcaaacaaactgatagtccggggcaaaccacc
caatcacagacgttgtcgcaagcgcagtcacagacacagtctcaggtccagtctcatacg
cagtctcaggcccagtcacatatgcagtctcaggcccagtcacatacgcagtctcagtca
cagtcccagtcacatacaccgtctcaggcccagtcgcatacaccgactcaggcccagtct
caggtccaatcacaaacacagtcgctggtccagtcacagacagcagacacgggcaattca
gtgaaagatgcggtcactgaggaaccaaaagaatcaagtagcagttga
DBGET
integrated database retrieval system
