Bidens hawaiensis: 143580279
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Entry
143580279 CDS
T11418
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143580279
09123 Folding, sorting and degradation
03018 RNA degradation
143580279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143580279
03041 Spliceosome [BR:
bhw03041
]
143580279
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143580279
mRNA cycle factors
Stress granule specific factors
143580279
Spliceosome [BR:
bhw03041
]
Complex C
Other components
Complex C specific factors
143580279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_Nup35
RRM_7
RRM_3
RRM_RdRP1_2
SET_assoc
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
143580279
NCBI-ProteinID:
XP_076919472
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MAAQVSQAPQAVNGGGGAQQFVPTSLYVGDLEFNVTDAQLFEMFNQLGQVVSVRVCRDLS
TRRSLGYGYVNYMNPQDAARAIEVLNFTPLNGKSIRIMYSHRDPSVRKSGSGNIFIKNLD
KAIDQKALHDTFSTFGNILSCKIATDSTGQSKGYGFVQYDSEESAQQAIEKLNGMLLNDK
QVYVGPFLRKQERDLAVDKTRFTNVFVKNLSESTTDEDLSKAFGEYGTITSAVVMRDAEG
NSKCFGFVNFENAEDAARAVEGLNGQKFDDKEWYVGKAQKKSEREQELKQKFEQSMKEAI
DKSQGLNLYLKNLDDSVTDDSLREYFAPFGTITSCKVMRDPNGTSKGSGFVAFSTSEEAS
RALMEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQMRPLAMAPAGAPRMPMFPPGGPG
LGQQMFYGQAQPTFIPPQPGFGYQQQLVPGMRPGGGPLPNFFMPMVPPGQQGQRPGGRRG
PGQQNQQQSVPLMQPPMMPRGRVYRYPPGRDVSAPYDIGSPMQLRDTAAISQPIPIGALA
SALANASPSEQRTMLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV
AEAMEVLRNVAQQQQQQQPADQLAALSLNELN
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaagttagtcaggcgcctcaggcggttaacggtggcggtggggcccagcag
tttgtgccgacgtccctgtatgttggggatttggagtttaacgtgacggatgctcagctg
tttgagatgtttaaccagttgggtcaagtggtgtcggttagggtttgcagggatttgtct
acaagaaggtctcttggttatggttatgtcaactacatgaaccctcaagatgctgcaagg
gctatcgaggtgctgaatttcactcctctcaatggaaagtcaatcaggataatgtattct
catcgggatcctagtgtgcgtaaaagtggctctggaaatatctttatcaagaatttggat
aaagcaattgaccaaaaagctctacatgacactttttccacattcggaaacattctctca
tgcaagatagctactgattcaactggtcaatcaaagggctatggattcgtgcagtacgac
agcgaggagtctgcacaacaagcaattgagaaactcaatggcatgcttctgaatgacaaa
caagtatacgtgggccccttcttacgcaagcaagaacgagacttggctgttgacaagacc
aggttcactaacgtctttgttaaaaacctctctgaatcgacaaccgatgaggatttaagc
aaggcatttggtgaatatggtaccatcactagtgctgttgtaatgagggatgctgagggt
aactcgaaatgctttggatttgttaattttgagaatgctgaagatgctgctagagccgtt
gaagggcttaatggtcaaaagtttgatgataaagaatggtacgtcggtaaagcccagaaa
aagagtgaaagagagcaggaattgaaacaaaagttcgagcagagtatgaaagaggcgatt
gacaaatcacaggggctaaatttgtatcttaagaatttagacgattcagttactgatgat
agtctcagggagtattttgcacctttcggtaccataacttcttgcaaggtgatgcgggat
cctaatgggacgagcaagggatcgggctttgttgcattttctacttctgaggaagcttct
agagctcttatggagatgaatggaaagatgattgctggaaagcctctttatgttgcgctt
gcgcaacgtaaggaagatagaagggcacgattgcaggcacagttttcacagatgcgacca
cttgcaatggcacctgctggagctcctcgaatgccaatgttccctcctggtggtcccggt
cttggtcaacaaatgttctatggtcaagctcaaccgactttcattcctcctcaacctggt
tttgggtaccagcagcagcttgttccaggtatgaggccaggtggcggtccattaccaaac
tttttcatgccaatggttccgccaggtcagcaaggacagcgtccaggtggcagacgtggt
cccgggcagcagaatcagcaacagtcagttcctcttatgcagcctccgatgatgccacgt
ggcagagtgtaccgttaccctcctggtcgtgatgtttctgctccgtatgatattggcagt
cccatgcagctgcgtgacactgctgcaatctctcagccgattcctattggcgctttagct
tctgcgcttgcaaatgcttctccatccgagcaaagaactatgttgggtgagaatttgtac
ccgttagtggaacagctggaagctgagtcagcagcaaaggtgaccggaatgctgctggag
atggatcagacggaggttctgcacttgttggagtcaccggaagcgcttaaggcaaaggtt
gcagaggcgatggaggttttgaggaatgttgctcagcagcagcagcagcagcagcctgct
gatcaacttgctgcgttgtcgttgaatgaacttaactaa
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integrated database retrieval system
