KEGG   Bidens hawaiensis: 143580418
Entry
143580418         CDS       T11418                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
bhw  Bidens hawaiensis
Pathway
bhw03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bhw00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    143580418
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bhw03019]
    143580418
   03036 Chromosome and associated proteins [BR:bhw03036]
    143580418
Messenger RNA biogenesis [BR:bhw03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     143580418
Chromosome and associated proteins [BR:bhw03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     143580418
    COMPASS/SET1 complex (yeast)
     143580418
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_IFT122_1st Beta-prop_EML_2 WD40 WD40_CDC20-Fz WD40_Gbeta EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_Aladin PAC11 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_SPT8 Beta-prop_ACSF4 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 PQQ_2 Beta-prop_WDR75_1st Beta-prop_SCAP TRM82_WD Beta-prop_WDR19_1st KNTC1_N Beta-prop_WDR41 Cytochrom_D1 SUKH_6 Beta-prop_WDR35_TULP_N DUF2415
Other DBs
NCBI-GeneID: 143580418
NCBI-ProteinID: XP_076919560
LinkDB
Position
Unknown
AA seq 313 aa
MEVGMAFRDYSGRISSMDFHRASNYLVTASDDESIRLYDVANATCLKTINSKKYGVDLVS
FTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFRGHHDRVVSLSLCARAEHFISGSLDR
TVLLWDQRADKCQGLLRVQGRPATAYDEQGLVFAVAFGGLIRMFDSRNYEKGPFEIFSVD
GDVSDANVVKFSNDGKLMLLTTKDGRVHVLDSFRGTLIGTHNVKPVSSNSTLEASFSPEG
MFVISGSGDGSVYAWNIRSGKEVWSKVASWLSTENEPPVIKWAPGSLMFVTGSSELSFWI
PDLSKLAAYVGRK
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaagtaggcatggccttccgtgattacagtggtaggataagttcaatggattttcac
agggcttcaaattatttggtgactgctagtgatgatgagtccattcggctctatgatgtg
gctaatgcaacatgtttgaagacaattaacagcaaaaaatatggggttgacttggtgtcc
ttcacgtcacatcccacaactgttatatactcctccaaaaacggatgggacgaatctctg
cggcttctctcattgcacgataacaaatacttgcgctactttagaggtcaccatgacagg
gttgtctccctcagtttatgtgcacgagcagaacattttatctctggctctcttgataga
actgttctactttgggatcaaagagctgataaatgtcagggacttttacgtgtacaagga
agaccagcaacagcttatgatgaacaagggcttgtctttgcagttgcttttggaggattg
ataaggatgtttgattcacgtaattatgaaaagggtccttttgaaatattttctgttgat
ggagacgtgtcggatgcaaatgttgtcaaattcagtaatgatggtaaacttatgttgttg
acaactaaggatgggcgcgttcatgtacttgactcctttcgtggtacacttataggcacg
cataatgtaaagccggtctcaagtaattctactttggaggcctcttttagtcccgaagga
atgtttgttatatcaggttcgggtgatggcagcgtttatgcttggaacattcgtagtggc
aaagaagtatggtccaaagtggctagttggttgagcactgaaaacgaaccacctgtcata
aaatgggccccgggcagtctaatgtttgttacgggttcttctgaattgtcgttttggatc
ccagatttgtcaaaactggcagcatatgttggaagaaagtag

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