KEGG   Bidens hawaiensis: 143580976
Entry
143580976         CDS       T11418                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bhw  Bidens hawaiensis
Pathway
bhw03030  DNA replication
bhw03410  Base excision repair
bhw03420  Nucleotide excision repair
bhw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bhw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    143580976
   03410 Base excision repair
    143580976
   03420 Nucleotide excision repair
    143580976
   03430 Mismatch repair
    143580976
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bhw03032]
    143580976
   03400 DNA repair and recombination proteins [BR:bhw03400]
    143580976
Enzymes [BR:bhw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     143580976
    6.5.1.6  DNA ligase (ATP or NAD+)
     143580976
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     143580976
DNA replication proteins [BR:bhw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    143580976
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     143580976
DNA repair and recombination proteins [BR:bhw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     143580976
   NER (nucleotide excision repair)
    Other NER factors
     143580976
   MMR (mismatch excision repair)
    Other MMR factors
     143580976
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 143580976
NCBI-ProteinID: XP_076919986
LinkDB
Position
Unknown
AA seq 796 aa
MFSLRSCYYTLCSSQHITHSLIIKPPHSPILPISKPFLKLLSISHSNNMSSSRPSAFDAL
MSNARAAANKNKTPSSASASASSPKKRKTLDSKPKLKPTITESKPDPTQIKPELPESNEG
NVQLKQDKPNPKTNENPNLGSEDEQKALKKQRVIDIDECIAQLKIKPVKFNPKKAAYWEE
GERVPFLFLVRVFDEISRESGRIVITEIVCNMLRTVIETTSDDLVAVVYLLANRIAPAHE
GLELGLGDASIIKALAEACGAKETHIKKQYKDLGDLGLVAKASRSSQPLMRKPQPLTVAK
VFDTFKVIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLTAL
GHAIVYTEKHASTHTESPLEEAAKIVKQVYSVIPVYDKIVPALLSGGVWDLPKTCCFSPG
VPVGPMLAKPTKGVSEILDKFQNMEFTCEYKYDGERAQIHYLEDGTVQIYSRNAERNTEK
FPDVVAAASRIKKPNVTSFVMDCELVAYDRKKQKILPFQILSTRARKNVVMSEIKVEVCI
YAFDLLYLNGQQLLQEQLITRRERLYESFTEEPGYFQLATAITSNDLEEIQTFLDTAVNA
SCEGLIIKTLTRDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRVGGYGA
FLLACYDSNKDEYQTICKIGTGFSEAMLEERSTSLRSKVIPKPKSYYRYADSINPDVWFE
ASEVWEVKAADLTISPVYCAAIGAVDPNKGISLRFPRLLRVREDKGPEDASSSEMVADMY
NAQKHTQSNNQDDEDD
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgttttctctccggtcatgttattacactctatgctccagtcaacacatcacacactct
cttattattaaacccccacactcaccaattctaccaatttctaaaccatttctcaaatta
ttatcaatctcacactccaataacatgtcttcatctcgtccgtccgccttcgatgcactc
atgtccaacgcacgtgccgccgccaacaagaacaaaacgccgtcgtctgcatctgcttct
gcttcttcacccaaaaaacgcaaaaccctagattcaaaacccaaattaaaacccacaatt
accgagtccaaacccgacccgacccaaatcaaacccgaattgcccgaatcgaatgaaggt
aatgttcaattgaagcaagacaaaccaaaccctaaaactaacgaaaaccctaatttgggt
tctgaagatgaacagaaggcgttgaagaagcaacgggtgattgatattgacgagtgtatt
gctcaattgaagattaagccagttaaatttaaccctaagaaagctgcttactgggaggaa
ggagaaagggtgccgtttttgtttctggttcgggttttcgatgagatttcgagagagtcg
ggtcggattgtgattactgaaattgtctgtaacatgctgaggactgtaattgagacaaca
tctgatgatttggtggctgttgtgtatcttttggcgaataggattgcgccagctcacgag
gggctcgagcttggacttggggatgcttcgataattaaggcgcttgcggaagcttgtggt
gcaaaagaaacacatattaagaagcaatataaggatcttggagatttgggtcttgttgct
aaagcgagccgttcatcacaacctctgatgcgaaaaccgcagccgttgacagtggctaaa
gtttttgatacatttaaggttattgctaaggaatctgggaaagacagtcaggataagaag
aagaatcacattaaaggacttcttgttgcagctactgattgtgaacctcaatatttgatt
cgtttacttcagacaaagttgcgaatcggtttagcagagcaaactcttctgactgcactt
gggcacgcaatagtctataccgaaaaacatgcatcaacgcacacggagtcacctctagaa
gaggctgctaaaattgttaaacaagtgtattcggtaattcctgtatatgataaaattgtt
cctgctttactttctggtggtgtgtgggacctacccaaaacgtgttgtttttcacctggt
gttccagtgggacctatgcttgctaaaccgactaaaggggtatctgaaattttggataaa
tttcaaaacatggagttcacatgtgaatacaagtatgacggggaacgggctcagatacat
tatctggaggatggtacagttcagatatatagcagaaatgctgaaagaaacacggaaaaa
ttccctgatgttgttgctgctgcttctaggattaaaaaaccgaatgtaacatcatttgtt
atggactgtgaactggttgcatatgaccgcaagaagcagaaaattcttccatttcagatt
ttaagcacacgtgctcgcaaaaacgttgtcatgagtgaaatcaaggttgaagtatgcata
tatgcattcgatttactgtatctgaatggacaacagcttttacaagaacaacttattact
cgtagagagcgtctatatgaatcctttacggaagaaccaggatatttccagcttgcaacc
gccataacatcaaatgatttggaagaaatacaaacattcttggatactgctgttaatgcc
agttgtgagggattgattattaaaacattaactcgagatgctacatatgagcctgcaaaa
cgatcaaataactggctcaagttgaagaaagactatatggacagtattggtgactcgtta
gatttagtacccatcgccgcctttcatggtcgaggaaaacgtgttggtggatatggcgcc
tttcttcttgcatgttatgatagtaataaggatgaatatcaaaccatttgcaagattggg
actgggttttcagaagcaatgcttgaggagcggtcaacaagtcttcggtctaaagtgatc
ccaaagccaaagtcgtattaccgatacgcagattctataaatcccgatgtgtggtttgag
gcatctgaggtttgggaggttaaagctgctgacttgacaattagcccggtttattgtgct
gcaattggagcggttgatcctaataagggaatttcactacgattcccacgtttacttcgc
gttcgtgaagacaaaggtcccgaggatgcttcatcttcagaaatggttgcggacatgtat
aatgcgcaaaagcatacccagagtaacaatcaagatgatgaagatgattga

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