Bidens hawaiensis: 143581274
Help
Entry
143581274 CDS
T11418
Name
(RefSeq) putative NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143581274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143581274
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143581274
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143581274
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
143581274
NCBI-ProteinID:
XP_076920214
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSGILNSGVNGSTSTFPDATGRAFNTAFSSQIGSSAADMNQNGGIDLLGLRSINGNFNIP
SMPGAYTSRNSGLNGPLNGVQQPTGSISNGRYAVNNLPVALSQHSAVSSLGLSGITNNGG
PGIGQTLGNREHMMSSMAMNNLVNGGNIGRSLTSGGLNMPAVASRLNLTAPQMVSLLGNS
YSGGGGPLSQNQFQAGNNHLNSMALLSELNRDHSFDMNDFPQLSGHFSSAGGSQRQLGGL
TRRQSVGFMQQNQEFSIQNEDFPALPGYKAGGNEFPVNMHQKEQLRDNAVSMMQSQQHLP
VGRSTVFSLGEGAYSSHQQQQHAPVNGGGSYIATNGQDLHFHGSEARNSGMLATGSRPVN
LSNTVPGGGSYDQLMQQYQHFQKQSQIHHVSPFRDPDLKATQLSQSAADRFGLLGLLNVI
RMNNPDLTPLALGIDLMTLGLNLNSPDNLYKNFSSPWSEEAAKGEPHYSIPECFNTKPPA
PLNQDSFSRFSPETLFYIFYSKPKDEAQLFAANELHNRGWFYHKELRLWFSRAPNMELLV
KTSTYERGCYYCFDPNTWETVRKDNFVVQYEMVEDRPVVPRH
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggatacttaattctggtgtgaacggctcaacatcaacttttccagatgctact
ggaagagcttttaatacagcattttcttctcagataggttcttctgctgctgatatgaat
caaaacggtggaatagatttactagggttacgtagcataaatgggaacttcaacattccc
agcatgccaggtgcatatacgtcaagaaactctggattaaatggtcctttgaatggtgta
cagcaacctacaggaagtatatctaatggacgatatgcagtaaacaatcttcctgttgca
ctttctcaacattctgctgtcagctcacttggactttctgggattacaaacaatggaggg
ccaggtataggtcaaactttaggaaacagagaacacatgatgagctcaatggcaatgaat
aaccttgttaatggtggaaacattgggagaagtttaacttccggtggacttaacatgcct
gcggtggcttctcgcttgaatctaactgcaccgcagatggtatctctgttaggaaattct
tactctggtggtggagggccactttcacaaaatcaatttcaagcggggaataatcactta
aattcaatggctttattatctgagttgaatcgtgaccattcgtttgatatgaatgatttc
cctcagttaagtggacattttagctctgctggtggttctcaaagacagttaggaggtttg
acacgtcgacaaagtgtgggatttatgcaacaaaaccaagaatttagcatccaaaatgaa
gattttccagctttacctggatataaagcaggtggcaatgagtttccggttaatatgcac
cagaaagaacagcttcgtgacaatgcagtgtctatgatgcaatctcagcaacatttgcct
gtcggaagatcgactgtcttcagtttaggagaaggtgcatattcatcgcatcaacaacag
cagcatgctccagttaatggtggtgggtcctacattgctacaaacggtcaagacctccat
tttcatggctctgaggcaagaaactcaggaatgcttgccactggctcaaggcctgtaaac
ctatccaacacagtgccaggtggcgggtcctatgatcaattgatgcaacagtatcaacac
tttcagaaacagtcacagatacaccacgtcagcccatttagagacccggatctgaaggcc
acacagttatcccaatctgctgctgatagatttgggttgttagggttattaaacgtcata
aggatgaataatcctgatttgacccctcttgctttgggtattgacctgatgacactcggt
ctaaacttgaattcccctgataatctttacaagaatttttcctctccgtggtcggaggaa
gctgcaaagggagagccccattactctattcccgagtgcttcaatacgaaaccaccggct
cctctaaatcaagatagcttctcgagattttctcccgagactctgttttatatcttctac
agcaagccaaaggatgaggctcagttgtttgcagctaatgaactacacaacagaggatgg
ttttaccacaaagagctgcgtctatggttttctcgggctccaaacatggaactactagtg
aagacaagcacatatgaaagaggttgttactactgtttcgatcccaacacatgggaaaca
gttcgaaaggacaactttgtggttcaatatgaaatggtagaagaccgaccggtggtcccc
cgtcattag
DBGET
integrated database retrieval system
