Bidens hawaiensis: 143583512
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Entry
143583512 CDS
T11418
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143583512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143583512
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143583512
mRNA degradation factors
5'-3' decay
Decapping complex
143583512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
143583512
NCBI-ProteinID:
XP_076921916
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MERSGSNDLSGVSIGSSLDDKRFDASQYAFFGRHATDKVEFGCLEEDDCNLSTGIVDDEY
HLFDREEEPDVGSLSDLDDLSTIFSKINRTVSGPRHPGVIGDRGSGSISRESSAASDWVQ
DRELPEWLDQHISDTESSHVSGRWSSQSHLSDPKPLYRASSYPHEKHQFFTEPALAPTSS
LPSFSPGSHNSLPSPRQHSNLNRSSGIGSPQIPFPETNLSPLSGLPLSSRFSGNRTQLGH
PGLAQYTQAQSQWANNMLHVDPNLMLQNGLLSPHLMSPNSLRLSPFALQPYLYDTLPSHP
LHLNKFRSPDTRDHRSKQKSKHGSRISRQGSDNSSQKNDNKCRVQFRSKYMTSEEIEAVL
NVQHAATHYNDLYINDYYHQARIAKNSSKSRFHPANLKDSSQRGRNSSDSQPRINVDSHG
RVSFSLIRRPQPLLEVDPPSGSSDNRSESKRSEKPLEREPMLAARIMIEDGVSVLLDVDD
IDRFLQSTQPPDGGSQARQKRQILLEGLAAALQLVDPLGVISKTSSKLAPKDDIVFLRVV
SLPKGRKLISKYLQLLSPSSELARIVCMTIFRHLRFLFGGLPSEHEASETVTSLAKIVKT
CVSAMDLNSLSACLAAVVCSSEQPPLRPLGSPAGDGATVILKSVLERATQLLSSANSSLQ
NPTLWQASFDAFFGLLTKYCLSKYDSLVQAMYAQVSPSTEIVLSEAAKAISREMPVELLR
ASLPHTDDNQRKMLVDFSKRSMHVGGFSGHKGGGGQVAPESVRG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctggtagtaatgatctgagtggtgtcagtataggttcttcgttagatgat
aaacggtttgatgcttcgcaatacgctttctttgggcggcatgcgaccgacaaggttgag
tttgggtgtttggaagaagatgattgtaatctttcgactggaattgttgatgatgaatac
catttgtttgaccgagaagaggaaccagatgtaggctctctgtcagatttagatgatttg
tcaactattttttcaaagataaacagaacagttagtgggcctagacatcctggagttatt
ggtgatcgagggtcaggatctatttcaagagaaagttcagctgcatctgactgggtacaa
gatagagaattacctgagtggttagatcaacatatctctgacacagaaagcagccacgtc
agcggacgatggtcttcacaatcacatctctcagatcctaaaccattgtaccgagcatca
tcttaccctcatgaaaaacaccagttttttacagagccagcactggcacccacatcatct
ttgccttcattctcacccggtagccacaacagtctcccttcaccacgccagcattcaaat
ctaaaccgttcatctggcatcggtagtccccagatccccttcccagaaacaaatctttca
cctttaagtgggctccctctttcatctcgttttagtggaaacagaactcaactggggcat
ccgggcttagcccaatacactcaagcccaaagccaatgggctaacaacatgttacatgtg
gatcctaatttgatgcttcaaaatgggctcttatcgccacatttgatgtcaccaaattct
ctacgcttgagcccgtttgcacttcagccatacttatacgacacccttccctctcacccg
ttacatttaaacaaattccggtcgcccgatactcgtgatcatagaagtaaacaaaagagt
aaacacgggtcgcgtatttcccgtcaaggctctgataacagcagtcagaagaatgataat
aaatgtcgggtacaatttagatctaaatacatgacgtctgaagagattgaagccgttctt
aatgtgcaacacgctgcaacgcattacaacgatctatatattaatgattattatcaccaa
gccaggattgccaagaattcttccaaaagccgattccatccggccaatttaaaagattca
tcccaacggggccgtaatagttcagattcacagcctcgtattaacgttgattcacatgga
agagtttcgttttctttaattcgaaggccacaaccgcttcttgaagtggacccgccatcc
ggttcgagtgataaccggtctgaatcgaaaaggtctgagaaaccgttggaacgagaaccg
atgcttgcagctagaatcatgattgaagatggggtttctgtgcttcttgatgtagatgac
attgaccgttttctgcagtcaactcagccgccagatggcggttctcaggcaagacagaag
cgtcaaattcttctagaaggcttggcggcagctcttcagctagtggaccctcttggtgta
atttcaaaaacgtcttccaaactggcacctaaagatgatattgtgttcttacgggtcgta
tctcttcccaagggtcggaaacttatttctaaatatcttcaacttctgtcgccgagcagt
gagctggcacgaatagtatgcatgacgatctttcgccaccttagatttttatttggtgga
cttccgtctgaacatgaagcctctgaaaccgttacttcactagcaaagatagtgaaaaca
tgtgtaagtgcaatggatcttaattcattaagtgcgtgtcttgctgctgtggtgtgttct
tcagaacaaccgccacttcgcccgcttggcagtccagctggcgatggtgctacggttatt
ttaaaatcggttctagaacgagctactcagttgttaagtagtgcgaattccagcttgcaa
aatccaacactttggcaggcttcgtttgatgcgtttttcggacttttgactaaatattgt
ttaagtaaatatgatagtttggtacaagctatgtatgcacaggtgtcaccgagcacagag
attgtgttatcggaagctgcaaaggcgatcagtcgagagatgcctgtggagcttctcagg
gctagtctgcctcatacagatgataatcagaggaagatgttggttgacttttctaaaagg
tcaatgcatgttggtggattcagtggtcataaaggtggtggtggtcaggttgctcctgaa
tcagtaagaggatga
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