Bidens hawaiensis: 143586926
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Entry
143586926 CDS
T11418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143586926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143586926
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143586926
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143586926
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143586926
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
143586926
NCBI-ProteinID:
XP_076924483
LinkDB
All DBs
Position
Unknown
AA seq
786 aa
AA seq
DB search
MDINGNSRGRSFDRSGRNPNAMKKPRLITEEPAIVRGGGYTSNNNSSNSNGNNSNGDNTP
VVQRQPVGFRTAVERDGEGYQPQSLTQIKQQQHQELVSQYRTALAELTFNSKPIITNLTI
IAGENLQAAKAIAATICNNIVEVPSDQKLPSLYLLDSIVKNIGRDYIKHFSTKLPEVFCK
AYRQVDSTVHSGMRHLFGTWKGVFPPQTLQSIEKELGFQSAGNGSTSGLTTSRLDSQPQR
PPARSIHVNPKYLEERQKLQQSTRAKDTVGDITRNLINSSSEDTGRQDRTTANINIQRAR
TDPRLKLHNIQQAQREAESDLTHENSGTSYNNNFDFGSDLSSERLAEPNTETVSRLARLH
NYSAPRSAISDVKLPSMNKGSGDIDRSWKNSDEEEYLWDDVSSVSLKPASSNSSKRDPRL
FFDSEKPVSKTAPLSSQQPSCQRPHSQSQSNRLPYELADQDLIDPDSKPPRSRVQKIPGI
SSQPHQDSFQLKSNSQKSKIQNLPIKHETFLPSYQPKPVSDMVPTISSSRAHPTSSSSLL
AAVSSIFGNKPISSTVSSSVRDTSSDPVSSLLSTLVAKGIISASEDDSKNPSVSDVKIPP
VVDSSSNPVSKSNTNEEIKCSIGCEFRTDIIREFHSGVISDLIDELPHQCGICGLRFKLQ
ERFDKHMEWHTLRNSDFDPSRRWFMNCDDWVNGSRTEGALEVDGEMMVNADESQSVCVLC
GEIFDDFYSLERGKWMFKGADYLDITKGKIGNGKNGVIVHVNCVSEHSLADLGLVNDVKL
VNVRLI
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaacggtaattctcgcggcagatcgtttgatagatcgggtagaaaccctaac
gccatgaagaagccgagattaataaccgaagagccggcgattgttcgcggtggtggttat
actagtaataataatagtagtaatagtaacggtaataattcgaacggtgataatacgccc
gtggttcagcggcagccggtagggtttcggactgcggttgagagagacggggagggttat
cagccgcaatcgttgacgcagattaaacagcagcagcatcaggagcttgtgagtcagtac
aggacagctctggctgagctgacttttaactcgaaaccgataattacgaacttgacgatt
attgctggagagaatttgcaggcggcgaaagcgattgctgccactatctgcaataatatt
gttgaggttccgagtgatcaaaagttgccatcactgtatcttcttgacagtattgtgaag
aacattggacgggattacatcaaacacttttcaaccaaacttcccgaggttttctgcaag
gcttatagacaggttgattctacagtacattctggtatgcgacatctttttgggacatgg
aaaggagtatttcctcctcaaacacttcaatctatagagaaagaactcggttttcaatca
gctgggaatgggtcaacttcagggttgaccacatctagacttgattcacagcctcaacgc
ccccctgcccgcagcattcatgtaaatccaaagtatttggaagagagacagaaactccaa
caatcaaccagggcaaaagatacagtgggtgacataacaagaaacttgattaatagttca
tctgaagatactggaagacaggaccgaacaactgctaatattaatattcaaagagcacgt
actgatcctcgacttaagttgcataatattcagcaagcacaacgagaggcggagagtgat
cttactcatgaaaatagcggtacatcatataacaacaattttgatttcggttctgattta
tcgagtgaacgacttgcagagcctaataccgagacagtatccaggctggcaagattgcac
aattattcagctccgagatccgcaatttctgatgtgaaattaccgtctatgaataaagga
agtggtgatattgacagaagctggaagaactcagatgaagaagagtatttgtgggatgat
gtcagttcggtttcgctgaaacccgcatcgtctaatagctcaaaacgagacccccggttg
ttttttgattctgaaaaaccggtaagtaaaactgcgcccctgtctagtcagcaaccgtca
tgccagcgtcctcactcgcagtcccaatcaaataggttgccatatgagttagctgatcaa
gatttaatagacccggatagtaaaccgcctcgatctcgagttcaaaagatcccggggatt
tctagtcaacctcatcaagattctttccagttaaaatctaactctcagaaatcaaagatt
cagaatttaccgataaagcatgaaacttttctgccatcttatcaacccaagcccgtatct
gatatggttccaacaattagttcctcacgggcccacccgacaagctcaagcagtttgtta
gctgcagttagcagcatatttggtaacaaaccaatatcatcaacagtgagttcaagtgtc
cgtgatacttcatcagatcctgtgtcgagtcttttaagtactttggttgctaaaggcata
atatctgcatcagaagatgattcaaagaacccgagcgtgagcgatgttaagattccgcca
gttgtagattcttcttccaatcctgtatctaaatctaacaccaatgaagaaatcaagtgt
tctattggttgtgaatttaggactgatatcatcagggagtttcattctggtgtgattagt
gacctaatcgacgagcttccgcatcaatgcggaatatgtgggttaaggtttaagcttcaa
gaacggtttgataaacatatggaatggcatacgttaagaaattctgattttgacccatct
agaaggtggtttatgaattgtgacgattgggttaatgggtcaagaaccgagggtgcattg
gaagttgatggtgagatgatggtgaatgcagatgagagtcaaagcgtgtgcgttttgtgt
ggggaaatattcgatgatttttatagtttagaaagaggtaaatggatgtttaagggagct
gattatctggatattacaaagggtaaaattggaaatggaaagaatggtgttatcgtgcat
gtaaattgtgtatcagaacattcacttgctgatctgggcctggtcaatgatgtcaaattg
gtaaatgttagattaatatga
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