Bidens hawaiensis: 143588952
Help
Entry
143588952 CDS
T11418
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
bhw Bidens hawaiensis
Pathway
bhw03013
Nucleocytoplasmic transport
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143588952
03015 mRNA surveillance pathway
143588952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143588952
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
143588952
mRNA cycle factors
P-body specific factors
143588952
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF3549
Motif
Other DBs
NCBI-GeneID:
143588952
NCBI-ProteinID:
XP_076925948
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MEHPDDDSHGVGDSQNKQDDEVSRREELKESLIAKLALRQTNLNPERPDSGALRTLDSSI
KRNTAVIKKLKQINEEQRESLMDELKNVNLSKFVSEAVAAICDAKLKSSDIQAAVQVCSL
LHQRYKDFSPTLVQGLMKTFFPGKSAEDADADRNLKAMKKRSALKLLLELFFDGVIEDAS
VFVTIIKDLASLEHLKDRDLAHTNLSLLASFARQARYFIGLPHAGEDLVEEFFKGLNITA
DHKKVFKKAFQTYYDAAAELLRSDHASLRQLEHENAKILNAKGELSEENASSYEKLRKSY
DQLYRGVSALAEALDMQPPVMPEDGHTRLTVGDDVASSGTGKETSVAEALWDDEDTKSFY
ECLPDLRAFVPAVLLGEAEQKVTDQSSKTQDQPSDSTHEPDQGHDTVDVAVLTDGKSEKK
KDEDEKDKESTKESDKDNKGKEKEKDVEAEKEKLRGPEGTNLDGLLQRLPGCVSRDLIDQ
LTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVPSMLLQLLEEE
FNFLINKKDQMNIETKIKNIRFIGELCKFKIAPSGLIFSCLKACLDDFTHHNIDVACNLL
ETCGRYLYRYPDTNVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKV
RPPMHQYIRKLLFTDLDKTAIEQVLRQLRKLPWSECEPYLLKCFLKVHKGKYGQIHLIAS
LTAGLSRYHDEFAVAVVDEVLEEIRLGLEVNEYGMQQRRIAHMRFLGELYNYEHVDSSVI
FDTLYLILVFGHGTEEQDVLDPPEDCFRIRLIITLLETCGHYFGRGSSKRKLDRFLIHFQ
RYILSKGALPLDVEFDLQDLFADLRPNMTRYLTIEEVDAALVQLEENERTVLTEKVSSEK
DKPTVLTTASGSSSVNGQVAANGIEENGGAHEEGNGGYDSASQGSTMDPDGNDDEDELDD
EACDSEDDYGGQASDEDNEFHVRQKVMVVDPEEEADFDREFRALMQESLDSRKLELRARP
TLNMMIPMNIFEGPTVGRVSEGESGDEAVDYESGERKEVPVKVLVKRGSKQQTKQMLIPS
DCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNALGNLPAGWSQTGGGRVVYRGH
SWDGHGGRSGSRHRYPHHTGGGYYYSRRK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcctgatgacgattcacatggtgttggtgatagtcagaacaagcaagacgat
gaggtatctcgtcgtgaagaattaaaggagtcattaatagcaaaattagctcttcgacaa
actaatctaaatcccgaaagacctgactccggagcacttagaacattggactccagcatc
aagcgtaatacagctgttattaagaaactcaaacagatcaatgaagagcagcgtgaaagt
ttgatggatgagttaaaaaatgttaatttaagtaagtttgttagtgaagcggtggctgca
atatgcgatgctaagttgaaaagttcagacatacaggctgcagttcaggtctgttcattg
cttcatcaaagatacaaagacttttctccaactttggtccaagggctcatgaaaaccttc
tttcccgggaagtctgcagaagacgcagatgcagacaggaatttgaaggccatgaagaaa
cgcagtgctttaaaacttcttctagaacttttctttgatggagttatagaagatgcttct
gtttttgtgactattattaaggatcttgccagtttagaacatttaaaagatagagatcta
gctcatacaaatttgtctcttcttgctagttttgcaagacaagccaggtatttcatagga
ctcccgcatgctggagaagatcttgttgaagagtttttcaaggggcttaatatcactgcg
gatcataagaaggtattcaaaaaggcgtttcagacatattatgatgcagcagctgaactg
cttcggtctgaccatgcttcactgcgccaattagagcatgagaatgcaaagattttaaat
gcaaaaggtgagctcagtgaggaaaatgcttcttcatatgaaaaactaaggaagtcttat
gaccaactgtatcggggtgtgtccgctttagcagaagcccttgatatgcaaccacctgtt
atgcctgaagatggtcacacaaggctcacagtaggtgatgatgtggcatcttctggtact
ggaaaagaaacttctgttgcggaagcgttatgggatgatgaagatactaaaagcttttat
gaatgtttacctgatcttagagcgtttgttcctgctgtgttactgggagaagcggagcag
aaagtgaccgatcaatcatcaaaaacacaagatcaaccaagtgattcaacacatgaacct
gaccaaggtcatgacactgtggatgtcgcagttttaacggacggtaaaagtgaaaaaaag
aaagatgaagatgaaaaagataaagaaagtacaaaggaatcagacaaagataataaagga
aaggaaaaggaaaaagatgttgaagccgagaaggagaagcttagaggtcctgaaggaacc
aacttggatggtttgttgcagaggcttcctggttgtgtgagccgtgacttgattgaccag
ttgactgtggagttttgttatttaaactcaaaatcatcccgcaaaaagcttgttagagcc
ctgtttaatgtacctaggacatctttggaactgctaccgtattactcgcgtatggttgcc
acattgtcaacttgtatgaaggatgtgccttctatgcttttgcagttactagaggaagag
ttcaacttcctcatcaataaaaaggatcaaatgaacatcgagactaagataaaaaacatt
cgttttatcggagagctttgcaagtttaagattgcaccatctgggctcatcttcagttgt
ctaaaggcttgtttagacgactttacccatcacaacattgatgtggcatgcaatctcctt
gagacatgtggcaggtatctttaccggtacccggataccaacgtgcgtatggcaaacatg
ctggaaattctcatgcgcctaaaaaacgtcaagaatttggatcctcgacacagtaccctt
gttgaaaacgcgtattatctatgcaaaccacctgaacgatctgcacgagtctctaaagtt
cgtcctcctatgcatcagtatattagaaagttacttttcacagacctggataagacagca
attgagcaagtactgagacaactccgtaagctaccatggagtgaatgtgaaccgtatttg
ttaaaatgctttctgaaggttcacaaaggaaaatatggtcaaattcacttgattgcttca
ctaactgctggattgagccgctatcatgatgagtttgcagttgctgtagttgacgaggtt
ttggaggaaattcggttaggattggaggtaaacgaatacgggatgcaacaaagacgaatt
gctcatatgcggtttttaggcgagctatacaactatgaacatgtggattcttcagttatt
ttcgatacgttatatttgattctcgtttttggtcacgggaccgaagagcaagatgtgctt
gatccgcctgaagactgcttcagaatcagattgataatcacacttctcgagacttgcggg
cactactttggtcgaggttcatccaagaggaaactggatcggtttttgattcattttcaa
cgatacatactcagtaaaggtgcacttcctctcgatgtagaatttgatttgcaggactta
ttcgctgatttgcgccccaacatgactcgttatctaaccattgaagaagtcgatgctgct
cttgttcagcttgaggagaatgaacgcacagttttaactgaaaaggttagcagtgagaag
gataaaccaactgttttaaccactgcatctggaagctcgtcggtcaatggtcaagttgct
gcaaatggtattgaagaaaatggcggggcccacgaagaaggtaacgggggatatgacagt
gcatcgcaaggtagcacaatggatccagacgggaatgatgacgaggacgagcttgatgat
gaggcgtgtgacagcgaggacgattatggtggtcaagcttctgatgaggataatgaattt
catgttaggcagaaagtgatggtagttgaccctgaggaagaggctgactttgaccgagaa
tttagggctctgatgcaggaaagtttggattcaaggaaactcgagttgcgggcccgtccg
acactaaacatgatgataccaatgaacattttcgagggtcccacggtcggaagggtgagt
gagggagaaagtggcgacgaggcagtagattacgagtctggagaacgtaaggaagtgccg
gtcaaagtcttggtcaagcgaggcagcaagcagcaaacgaaacagatgttgataccgagc
gactgctcgcttgtgcagagcacaaagcagaaagaagcggcagagttggaagagaaacag
gatattaagagactggtgttagaatataacgatagagaagaagaggaactcaatgcattg
gggaatttgccagctggctggagtcaaactggtggtggtagggtggtttacagaggccac
tcgtgggatggtcatggtggcaggtccgggtcccgccataggtacccacatcatacaggc
ggtggatattattatagccgaagaaaatga
DBGET
integrated database retrieval system
