Bidens hawaiensis: 143589254
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Entry
143589254 CDS
T11418
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143589254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143589254
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143589254
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
143589254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143589254
NCBI-ProteinID:
XP_076926192
LinkDB
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Position
Unknown
AA seq
689 aa
AA seq
DB search
MKQRLLVRAFSKTLTLVLFHRSSRATFSMASSSFAIKNVTKSNFDSSLADLRQHVRDSDF
VSIDLEMTGVTSSPWRESFEFDRFDVRYLKMKDSAEKFAVVQFGVCPFRWDPTKQSFIAH
PHNFYIFPRQEMGTYDSSSYEFLCQTSSIDFLAKYQFDFNVCIKEGISYLSRAQEDDIRL
QLHSLNESEPFESLSADKEVKDVPLVRMADILFVERMRNKISEWHDDLLQIRNGGSHRTT
EDSSESTDQFQTIFFRTRPTIKLNGFTSRQLRLIKSVVEKSFKDLVYARVNDGSCFQQII
VYADSKRDLELLMKEVKESHLKEAEKKIEAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHI
CRKFVGPLPSSLEEYVPLAQKTFPFIIDTKILLNANNILQLKMKKSSTSLAKAFAIMCPH
IASGVGSLGSANNNSVAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQSCNHLGIDF
TSQSMLIKQDKLQSYINLLYLSWSSGDIVDLKTGQTRTESSAFNTFKIQQSKILFPNVVL
IWGFSSNLKAREIKESLAKVFGLTSVASIFHLDKTAVFVQFSKPELVSDFLKLKTEIENK
NEAIYVLHPFSDLLEGGKTGAGCYEVYKEICGSPVSKVLFADQAEAVCKLDSKVLGSRAH
KTDSFADSESATDTKMAETSGEVLGLVSC
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacgattattggttagggcgttttccaaaaccctaaccctggttctgttccac
cgttcttctcgggccacattctccatggcttcctcaagttttgctatcaagaatgtcact
aaatccaacttcgattcgtctttggctgaccttcgtcaacatgtcagagactctgatttc
gtgtcaattgacttggaaatgacaggtgtcacaagctccccatggagagagtcctttgag
tttgacagatttgacgttcggtaccttaagatgaaggactctgctgagaagtttgctgtt
gttcagtttggtgtttgcccctttaggtgggaccctaccaaacagtccttcatcgctcac
ccgcacaacttttatatatttccaagacaagaaatgggaacttatgactcatcatcgtac
gagttcttgtgccaaacttcctcaattgatttcttggcaaagtaccagtttgatttcaac
gtgtgtataaaagaaggaatatcttatttatcaagagcacaagaagatgacattaggtta
cagttacattcattaaatgaatccgagccattcgagtcattatccgcagataaagaagtt
aaagatgttccactggtcagaatggcagatattctttttgtggagagaatgaggaacaag
atcagtgaatggcatgatgacctgttacagattagaaatggagggtcccacaggaccacg
gaagattctagtgagtcaactgatcagtttcagactattttctttaggacgcgtccaacc
atcaaattgaatggattcacttctcgccaactaaggttaattaagtcggttgtagaaaaa
agcttcaaagatttagtgtacgcccgtgttaatgatggttcatgttttcaacaaattatt
gtctacgcagactccaaacgggacctagaattacttatgaaagaggttaaagaaagccat
ttgaaggaagcagaaaagaagattgaagcggccattggcttccgccatgtcatcgacctt
ctttcctctgaacaaaagttgattgttggacataactgttttcttgatattgcacatata
tgtagaaaatttgtgggtcctctcccttcgagtcttgaagaatatgtaccattagctcaa
aaaaccttcccgttcataattgacacgaaaatccttctgaatgcgaacaatatattgcaa
ttgaaaatgaagaaaagtagcacgtcactcgctaaagcttttgcaatcatgtgtccacat
attgcttctggtgttggtagtcttggttctgctaataataattctgttgcagttgaggtt
caagttgatgatatgaggtcatcaaactggaactcaggagctaagcacgaggccggttat
gatgctttcatgacaggctgtatttttgcccaatcatgcaaccatcttggtattgatttc
acctctcagtctatgttaataaaacaagataagcttcaaagctacatcaaccttctgtac
ctcagctggtctagtggcgacatagttgacttaaaaaccggtcaaacccgaacagaatct
tcagcattcaacactttcaaaatccaacaatcaaagattctgtttccaaacgttgtacta
atttgggggttttcatccaatctcaaagcgagggagataaaagaatctttagccaaagtc
tttgggttgacttccgtcgcatccattttccatttggataaaaccgcagtgtttgttcag
tttagcaaacccgaattagtttctgattttttgaaactgaaaaccgagatagagaataag
aacgaggcgatttatgttttgcacccgttttcagaccttttagaaggtggaaaaacaggt
gctggttgttatgaggtttataaagagatttgtgggtcacctgtttcaaaagtattgttt
gctgatcaagctgaagctgtctgtaaattggactccaaagtgttgggaagtagggcccac
aaaacagattcttttgctgattcagaatctgcaactgatactaagatggcagaaaccagt
ggggaagtactaggtttggtatcttgctga
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