Bidens hawaiensis: 143589546
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Entry
143589546 CDS
T11418
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143589546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143589546
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143589546
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143589546
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143589546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143589546
NCBI-ProteinID:
XP_076926392
LinkDB
All DBs
Position
Unknown
AA seq
588 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELPPYVLIRHPDNTVSTDDVPKSSNAHFLRYKWYRVQSDKKV
AICSVHPSEQATLQCLGCVKAKLPVAKSYHCTPKCFSDAWQHHRVLHERAASAVNENGNE
EEDIYGRFNNTTSGVNNNGTINNSSTNGVTPLYPAAITQRNGGEIWFEVGRSKTYTPTAE
DIGHVLKFECVVIDSGTKLPVGQPNTILTSRVIPAPSPSPRRLISVTNADMAGTLDSSSG
TFSVLSYNVLCDAYATSDLYGYCPSWALSWPYRRQNLLREIVGYLADIVCLQEVQSDHFE
EFFAPELDKHGYQALFKRRTAEVQNGNNQIIDGCATFFRRDRFSHVKKYEVEFNKAAQSL
TDALVPNAQKKTALNRLVKDNVALIVVLEAKFGNQGVDPLGKRQLICVANTHVNVPNELK
DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPMHPDLAVDPL
GILRPDTKLTHTLSLVSAYSSFARIGYEQQKKRVDPNTNEPLFTNCTRDFIGTLDYIFYS
ADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgagagtgcacctcccttccgatattcccattgtaggctgcgagctc
cccccctatgtccttattcgccatcccgacaacaccgtctccaccgatgatgttcccaag
tcctccaatgcccatttcttaagatacaagtggtaccgcgtgcagagtgataagaaagtt
gctatatgtagtgtacatccctccgagcaagccacattgcaatgcttaggttgtgttaaa
gctaaattgcccgttgccaaaagctaccactgcactcccaagtgtttttccgatgcctgg
caacaccatcgggtcctgcacgagcgggctgctagtgctgtgaatgaaaatggtaacgag
gaggaggatatttatggacggtttaataacactacgtccggggtaaacaataatggtacc
attaataatagtagtacgaatggtgtaacgcctttatatcctgctgcaattacgcaaaga
aacggtggtgagatttggtttgaagtcgggcgttcaaaaacgtacacgccgacagccgag
gatatcggtcatgttttgaagtttgaatgtgttgtgatcgattccgggacgaagttgcct
gttgggcagccgaatactatattaacgtcccgtgtgattcccgccccgtcaccgagtccg
aggcggttgatttcagttaccaatgctgacatggcaggcactttggattcgtcttctggg
accttttctgtgctgtcgtataatgtgttgtgtgatgcatatgccactagtgatttgtat
ggttattgcccctcgtgggccctatcttggccttaccgaaggcagaatttgttaagagag
attgttggttaccttgcggatattgtttgtctacaagaggttcaaagtgaccattttgag
gagttttttgcacccgagttggacaaacatggatatcaagctcttttcaagaggagaacc
gctgaggtgcagaatggtaataatcaaataattgatggttgtgcaacgttttttcgcaga
gatagattctcacatgtgaaaaaatatgaggtcgagtttaataaggctgcacaatcttta
actgatgctttggttcctaatgcacaaaagaaaacagctttgaaccgtttggttaaggac
aatgttgcgttaattgttgttctagaagcaaagtttggtaaccaaggcgttgatcctctt
ggtaaacgacaacttatttgcgtggcaaatactcatgtgaacgttccgaatgagctaaag
gacgtcaaactatggcaggttcacacactgttaaaaggattggaaaagatagctgcgagt
gcagatattccaatgttagtctgtggtgacttcaattcagttccaggaagtgctccacac
gcgctacttgcaatgggaaaagttgatccaatgcatccagatctagctgtagaccctctt
ggaatattaagacccgacaccaaattgactcacactctctccttggtaagtgcgtactcg
tcgtttgctagaattggttatgaacaacagaagaagagagtggaccctaatacaaatgag
cccttgtttacaaattgcacaagagactttattgggacccttgattatatattttactca
gctgatagtttgagtgtggaatcgttattggagcttttggatgaggatagtttgaggaag
gatacagcacttccgtctccagaatggtcatctgatcacattgcactgttagctgaattt
cgatgcaagcctcgtgctagacgttaa
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