Bidens hawaiensis: 143591679
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Entry
143591679 CDS
T11418
Name
(RefSeq) general negative regulator of transcription subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143591679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143591679
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143591679
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143591679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
SEF14_adhesin
Motif
Other DBs
NCBI-GeneID:
143591679
NCBI-ProteinID:
XP_076927934
LinkDB
All DBs
Position
Unknown
AA seq
828 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKAKPPRLTHLESSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKEFIDDYVERNQEDFDEFEDVDMLYNTLSLDMVDA
LEDLVSIVPPSLVKGVGATGAALSMKNVVSSPSVQSSVVVSVQDQVEETVSQDNSSDHGP
KTPAPKTSAILSSSPTPAGSHATTPVAVAASSILPGQSPVRGILDNTPSAVPSSPVNKEE
EVGGFPGRKASPAFNIGRGGLTGQPSVTTSNIPTNIVTPVSERVGGMVHGSPVSSLSNRM
MMSQGGAKSSDGGDNGSGGDASGMTPRVYSPSGLQWRPGSPFQNQHDGARARPEIAPDQR
EKFLQRFQQVQQQTQNNNTLLNMPPISGNHKQFSGQQSPLLQQFNSQSSTVLPQGGLGGA
LSAGSNNVTSAQQPSLIHLQAGQQTFMPAGSKDVEIGNAKTDDMEQQQSLVDDSADPAQT
AEPNKNAANEEDSKASYALDSKVSDVDLSPGQPLQLNQSGTLGVIGRRSLSDLGAVGDNL
GGLAVNLGGTHDQQYNLQMLEAAFYKLPQPRDSERAKSYTARHPAVTPQSYPQVQAPIVN
NPAFWDRLGSDNIGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPK
FATDDFEQGTYVYFDFHIGNDEMQNGWCQRIKTDFKFEYNFLEDELIV
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtaggaagcttcaaggcgagatcgatcgagtgttgaagaaagtgcaagaa
ggcgttgatgtattcgacagcatatggaacaaggtttatgatacggataatgcgaaccag
aaggagaagtttgaggcggatttgaagaaggagattaagaagctgcagaggtatagagat
cagattaagacatggattcagtccagtgagatcaaggataaaaaggttagtgcctcttat
gagcaggctttaatggatgcacgcaagcttattgagcgtgaaatggaacggtttaagatt
tgtgaaaaggagacaaagacaaaagctttctccaaagaaggcctgggacagcagcctaaa
acagatccgaaggagaaagccaagtcagagactagagactggctgaacaatacggtgtct
gagctggaatctcaaattgatagctttgaagctgagatggaggggctgtccgttaagaaa
ggaaaggcaaaacctcctagactgacacatttagaatcatcaattacacggcacaaggct
catataatgaagctagagttaatattgaggctgctagataatgacgaattgagtcctgag
caagtcaatgacgttaaggaattcattgatgattatgtggaaagaaatcaggaggatttt
gatgaatttgaggatgttgatatgctatacaacaccttatcactggacatggtagatgca
ctagaagatctggtttccattgtgccacctagccttgttaagggtgttggtgctaccggt
gctgctctaagtatgaaaaatgtcgtgtcttcaccttctgttcagtcatcggtggttgtt
tctgttcaagatcaagtagaggaaaccgtgtctcaagacaacagttcagatcatgggcca
aagacaccagctccaaaaaccagtgcaatcttgtcttcttctccaacaccagctggcagt
catgcaaccacccctgttgctgttgctgcttcttcaatccttccaggtcaaagtcctgtc
aggggtattttagacaatacaccctccgccgttccttcctcgcctgtaaacaaggaagaa
gaagttggtggatttcctggtcgtaaagcatctccagctttcaatatcggtagaggcggt
ttgaccggtcaaccctcagttactactagtaatattcctaccaacattgttactccagtt
tctgagagagttggtggcatggtgcacgggtcaccagtttcatctttgagtaacagaatg
atgatgtcacaaggtggagctaaatccagtgatggcggtgataatggcagtggcggtgat
gctagcggtatgacacctagagtctactcaccatctggattacaatggaggcctggaagt
ccttttcaaaatcagcatgatggggcacgtgctagacccgaaattgcaccagatcaacga
gagaagttcttgcagcggtttcaacaagtgcagcaacaaactcagaataataatactctt
cttaacatgcctcctatttctggaaaccataagcaattctcaggacagcagagtcctctt
ttgcaacagttcaattctcaaagttcaacagtgttgccacaaggtggattaggtggagca
ttgtcagcaggttctaacaatgtaacatctgcacaacaaccaagtttgattcatttgcag
gctggccaacaaacgtttatgcccgctggatctaaagatgttgaaattggcaatgcaaag
actgatgacatggagcaacagcaaagcctggttgacgactctgctgatcctgctcaaact
gctgaacctaacaagaatgctgctaatgaggaagattcaaaggcgtcatatgcattagat
tcaaaggtgtctgatgttgacctctcacctggtcagcctttacaactgaaccagtctggc
acccttggtgttataggtagaagaagcctttctgaccttggtgcagttggagacaacctt
ggtggcttagctgtcaacttaggtggcactcatgatcagcaatacaatctacagatgctt
gaagctgccttctacaaacttccccaaccccgagactctgaaagggccaagagttacact
gcaagacaccctgctgtgacccctcaaagctatcctcaagtacaggctccgattgtgaat
aatcccgccttttgggatcgtcttggatctgataatattgggaccgataccttatttttt
gcattctactatcaacagaacacttatcaacagtatttagctgctaaagagttaaagaag
caatcatggaggtaccataaaaagtacaacacgtggtttcaacgacacgaggaaccgaaa
tttgccaccgatgattttgagcagggaacgtatgtgtattttgattttcatatcggcaat
gatgagatgcaaaacggatggtgtcagagaatcaagacggatttcaagtttgagtacaac
tttctggaagacgagctgattgtgtaa
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