Bidens hawaiensis: 143593446
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Entry
143593446 CDS
T11418
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143593446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143593446
Enzymes [BR:
bhw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143593446
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143593446
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143593446
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143593446
NCBI-ProteinID:
XP_076929191
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MADPPRVRRGYVIVIESMLSVLRVHLPSEIPIVGCELSPYVLLRGADQTVFADDVAESAP
VDGQFLRYKWYRIHSDKKVTICSIHPSEQATLQCVGCVKAKIPVAKSYHCSPKCFSDAWQ
HHRVLHERATSAVNENGNEEEEIFGRFNNNNNIISQSLSNGASTPLYPAAVTHRNGGETW
FEVGRLKTYTPTADDIGHVLKFECVVVDVESKSTVGSANTLLTSRVIPAPSPSPRRLVSV
SNADVAVGSLDSGTFTVLSYNILSDTFATGDMFSYCPSWALSWPYRRQNLLREIVGYRAD
IVCLQEIQSDHFEEFFAPELDKHGYQALYKKKTTEVFNGSVMSIDGCATFFRRDRFSHVK
KYEVEFNKAAQSLTDALVPSAQKKTALNRLVKDNVALIVVLEAKFSNYGVDNPGKRQLVC
VANTHVNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGK
VNPMHPDLAVDPLGILRPTTKLTHTLPLVSAYSSFARIGSYEQQKKRVDPTTNEPLFTNC
TRDFIGTLDYIFYSADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALMAEFRCKPRA
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccgccacgtgtccgccgaggttatgttattgtgattgaaagcatgctgagt
gtgctgagagtgcatttgccgtctgagattccgattgtcggctgcgagctttcaccgtac
gtgctgcttcgtggcgctgatcagactgtgtttgcggatgatgtggcggaatctgcgccg
gtcgacgggcagttcttgagatataagtggtatcgtatacatagtgataaaaaagtcaca
atctgcagcatacatccatcagaacaagctactttacaatgtgtaggttgcgttaaggct
aaaatacccgttgctaaaagttaccattgttctcctaaatgtttttccgatgcgtggcaa
caccatcgcgttcttcacgaacgggccacaagtgccgttaacgaaaacggaaacgaagaa
gaagaaatatttggccgatttaataacaacaataatattattagtcaaagcttatcaaac
ggtgcttccacaccgttatatcctgcagctgtgacacataggaacggtggtgaaacatgg
tttgaagtcgggcggttaaaaacttacacaccaaccgccgatgatattggtcacgttttg
aagtttgaatgtgtggtggttgatgttgagtcaaagtcaactgttggatcagcgaatact
ttactgacgtcacgggtgattccggctccgtcaccgagtccacggcggttggtttcggtt
agtaacgctgatgtggcagtggggagtttggattcggggacgtttactgtgttgtcatat
aatattttgtcggatacatttgctacgggtgatatgttcagttattgtccttcgtgggcc
ctttcttggccgtatcgtagacaaaatttgttacgagagattgttggatatcgagcagat
attgtttgtcttcaagagattcaaagtgatcattttgaagagttttttgcacctgagctc
gacaaacatggttatcaggctctatataagaagaaaacaaccgaggttttcaatggcagt
gttatgagtatcgatggatgtgctacatttttccgtcgagataggttttcacacgtcaaa
aaatacgaggttgagtttaataaagctgcacaatctttaacagatgctttagttcccagt
gctcagaagaaaaccgctctaaatcggcttgttaaggataatgttgcattaattgttgtt
ctagaagcaaagttcagtaactacggtgttgataatcctgggaaacgacaacttgtttgt
gtggcaaacacccatgtgaatgttcaacaagatctaaaggatgttaaattatggcaggtt
catactttattaaaaggtttagaaaagatagccgcgagtgcagatataccaatgttagtt
tgtggagattttaattcggttcctggaagtgctcctcatgcacttttagcaatggggaaa
gttaacccgatgcatccagatttagcagttgacccgctcgggattcttcgacccaccact
aaattgactcatactttgcctctggttagtgcgtattcgtcttttgcaagaattgggagt
tatgagcaacaaaagaagagagtggaccccactacaaacgaaccgttgtttacaaattgc
acacgggattttattggtacccttgattacatattttactcagccgacagtttgagtgtg
gaatctttgttggagcttttggatgaagatagtttaaggaaagacacagcactaccttca
cccgaatggtcttctgatcatattgcattaatggctgagttccgttgcaaacctcgtgct
agacgttag
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