Bidens hawaiensis: 143593514
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Entry
143593514 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143593514
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143593514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143593514
03041 Spliceosome [BR:
bhw03041
]
143593514
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
143593514
Spliceosome [BR:
bhw03041
]
Complex B
Other components
Prp19-related factors
143593514
Complex C
143593514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_19
TPR_15
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
143593514
NCBI-ProteinID:
XP_076929241
LinkDB
All DBs
Position
Unknown
AA seq
906 aa
AA seq
DB search
MIPTELYPTQDDLLYEEELLRNPFSLKLWWRYLIARTESPFKKRAIIYERALKALPGSYK
LWLAYLRERLDLVRNLPITHSQYQTLNNTFERALVTMHKMPRIWIMYLTSLTEQKLVTKT
RRTFDRALCALPVTQHDRIWEPYLVFVSHRGVPIETALRVYRRYLKYDPGHIEDLIEFLL
RSGLWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCELLTQHATEVSGLNVDAIIRGGI
TKFTDEVGRLWTSLADYYIRRKLLEKARDVFEEGMTTVVTVRDFSVVFDAYSQFEESVLA
MKMEGMDEDEDEEEDENNDEDDEEDDRLNVAKLEHKLKRFWLCDEKDVDLRIARLEHLMD
RRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPMKAVGKPHTLWV
AFAKLYEAHNDIANARVIFDKAVQVNYKAVDNLASVWCEWAEMELRHKNFRGALELMRRA
TAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDLRIA
TPQIIINYAMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLERS
RELFEHAVEMAPAEVVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKLIMYEIYI
ARAAEIFGVPKTREIYEQAIVSDGLLEKDAMKMCIKYAELEKSLGEIDRARKIYVYASWL
ADPRLDDEFWTKWNEFEVNHGNEDTFRDMLRIKRSVVARHSQTHVMLPEYLMQKANGDET
GSKKTEEDEMAALERKVAPDAINNIVANDANTARFVHGGVQLSEKESGLILNREEIELPE
GSGSDEEDEDDDGKIEIKQKDVPEAVFGGLIRKRDEEEEAKEKESENADGGSRLGALERI
KRMRQG
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaccgagttatacccaacccaagacgatctcctatacgaagaagaactcctc
cgtaaccccttcagcttaaagctctggtggcgttacttaatcgctcgaaccgaatcaccc
ttcaaaaaacgagccatcatctacgaacgagccttgaaagctttacccggcagctacaag
ctctggctcgcttacctccgtgaacgcctcgatctggtacgtaatctccccatcactcat
tcccagtaccaaaccctaaacaacaccttcgaacgggccttagttactatgcataaaatg
cccaggatctggatcatgtatttgactagcttgaccgaacaaaagctcgttaccaagacg
cgtaggacgttcgatagggcgctctgcgcattgccggtcacgcagcacgataggatttgg
gaaccgtatttggtgtttgtgagtcatcgtggtgtgccgattgagacggcgttgagggtt
tatcgacggtacttgaagtacgaccccgggcatattgaggatttgattgagtttttgttg
cgctccgggttgtggcaggaggcggcggagaggttggcgggggttttgaatgacgatagg
ttttattcgattaaagggaagacgaagcatcggttgtggttggagctttgtgagctgctg
acgcagcatgcgacggaggtctcggggttgaatgtggatgcgattattagaggggggatt
acgaagtttacggatgaggtcgggcggttgtggacgtcgttggcggattattatattagg
aggaagttgttggagaaggcgagggatgtgtttgaggaagggatgacgacagttgttacc
gttagggattttagtgtggtttttgatgcgtattcgcagtttgaagagagtgtgcttgcg
atgaaaatggaaggtatggacgaggatgaagacgaagaggaagatgaaaacaatgatgaa
gacgacgaagaggatgatcggcttaatgtggcgaaactagaacacaagcttaaaagattt
tggttgtgtgatgaaaaggatgttgatttacggatagcgagattagagcatcttatggat
agaagacccgagcttgctaacagtgttcttctacgccagaatccgcataatgttgaacaa
tggcatagacgggtgaagatctttgaaggcaatccaactaagcagattttaacgtatacc
gaggcggtgagaacaattgaccccatgaaagctgttgggaagcctcatacgttatgggtt
gcgtttgctaaactgtatgaagctcataatgatattgccaatgcacgggtgatatttgat
aaagctgtgcaagttaactataaagcggttgataatcttgctagtgtatggtgtgaatgg
gctgaaatggaacttagacataagaactttaggggtgcgttggagttaatgagacgcgcg
acagctgaaccgtctgttgaggttaaacgcagagtggctgctgatggcaatgaaccggtt
caaataaagttacacaaatctttaagactttggacgttttatgttgatttggaggaaagt
ttaggcactttggaatccacgcgtgcagtgtatgagagaatcttggatcttcgtattgcc
acaccacaaattattataaactatgcaatgctgttagaggataataagtacttcgaggat
gcttttaaggtctacgaacgaggcgtgaaaatattcaaatatccacacgtgaaagacatt
tgggtcacatatctttcaaaatttgtcaaacgatacgggaaatccaagcttgaaagatcc
cgagagctatttgagcatgctgttgaaatggcacctgccgaagttgtaaaaccattatat
ctacaatatgcaaaactagaagaggattacggtttagctaaacgggccatgcgcgtttat
gatcaagcaacgaaagcagtcccaccaaacgaaaaactgatcatgtatgaaatatacata
gcgcgtgcagctgagatatttggagttccaaaaactagggagatttatgagcaagcaatt
gtgtcggatgggcttcttgaaaaggatgcaatgaagatgtgtattaagtatgctgagctg
gaaaagagtttgggagagattgaccgtgctcggaaaatctacgtttacgcatcttggttg
gcggatccgcggcttgatgatgagttttggactaaatggaatgagtttgaagtaaatcat
ggtaatgaggatacttttagagatatgcttcgtattaagagaagtgttgtcgcaagacat
agtcagacacacgtgatgctaccagagtacttaatgcagaaggctaatggtgatgaaacc
gggtcaaagaaaactgaagaagatgaaatggctgctttagaaagaaaagtggcgcctgac
gccattaataatattgtcgccaatgacgccaacactgccagatttgtgcatggcggtgta
caattgtcagaaaaggagtcgggattgattctgaacagggaagagattgagctacctgaa
ggaagtggaagtgatgaagaagatgaggatgatgatggtaaaattgaaattaaacagaaa
gatgtgcccgaagctgtgtttggagggctgattaggaaaagggatgaagaagaagaagcg
aaggaaaaagagagtgaaaatgcagatggaggaagccggcttggggcgcttgaacgaatt
aagcgtatgcgccaaggttag
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