Bidens hawaiensis: 143599124
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Entry
143599124 CDS
T11418
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143599124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143599124
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143599124
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143599124
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
143599124
U7-dependent histone pre-mRNA processing factors
143599124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
143599124
NCBI-ProteinID:
XP_076933274
LinkDB
All DBs
Position
Unknown
AA seq
695 aa
AA seq
DB search
MASIVGGQGQSLKRRDSTLTRESDVMTITPLGAGSEVGRSCVFMTFKGKTIMFDCGIHPG
FSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL
LSDFVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDVCIIEATYGVQLHQPRHIREKRFTDVI
HSTVAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYI
NAMNERIRNQFANSNPFDFKHISPLKSIDEFNDVGPSVVMASPGSLQSGLSRQLFDKWCA
EKKNVCLIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTTTFL
EELMPPNIILVHGEANEMGRLKQKLVTHFTDRNTKLYTPKNCQSVEMPFNVEKMAKTIGK
LAERTPDNGENVSGLLVRKGFSYQIIAPDDLHVFSQLSTANVTQRITIPYSGAFGVIKHR
LKQIYESVESVPDEETGVLTLQVHERVTVRQDSENHLSLQWTADPISDMVSDSVVALVLN
ASREMPKVVEEVIKDEGVEELKKSEKIIHALLLNLFGNVKYGEDGRLVITVDDNVAYLDK
QTGEVESENEGLKERVKVAFRRIQTAVKPIPVSGV
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatcgtcggggggcaagggcaatcattgaagcggcgtgattccactctgact
agagagtccgatgtcatgactattactcccttaggcgctggaagcgaggttggaagatct
tgtgttttcatgacattcaaaggcaaaaccatcatgtttgattgtggaattcatcccggc
ttttctggtatggctgctttaccttactttgatgaaatcgacccctctaccatcgatgtg
cttctcattactcattttcacttggatcatgctgcctctcttccttactttctcgaaaag
actactttcaagggacgggtcttcatgacgcacgcaacaaaggctatttacaagctgctt
ttatcagattttgtcaaagtcagcaaagtttcagttgaagacatgctatttgatgaacaa
gacatcctacgatccatggataaaattgaggttattgacttccatcaaacactagaagtc
aacgggatccggttctggtgttacacagccggccacgtgctcggtgcagccatgttcatg
gtggacatagctggtgtgcgtgtactctacacgggagattactcacgcgaagaagatcgc
catcttcgagccgctgagttgcctcaattttcaccagacgtatgcataatcgaggcaact
tacggggttcaacttcaccaaccgagacacattcgtgaaaaacggttcacagatgtcatt
cattcaactgtggcccaaggcggtcgtgtgttaattcctgcgtttgcccttggtcgagcc
caagaactactcttaattcttgacgagtactggtcaaaccaccctgagttacacaatgtc
ccgatatactatgcgtctccgcttgcgaaacgttgcatggcggtttatcaaacatacata
aacgccatgaatgaacggattcgtaaccagtttgcaaactcaaacccgtttgatttcaag
cacatttcaccgttaaaaagtatcgacgagtttaacgatgtgggaccctcggttgtgatg
gcgagtccgggtagtcttcaaagtgggttatcccggcagttatttgacaaatggtgtgct
gagaagaaaaacgtgtgtctcatacccggttatgttgttgaaggcacgttagcgaaaact
ataattaacgagccgaaagaagtgactctcatgaacgggttaaccgcaccgcttaacatg
caggttcactacatatcattctcggctcatgctgactcagcgcaaacgactacttttcta
gaagaacttatgccaccaaatattattctcgttcacggtgaagcaaacgaaatgggccgg
cttaaacaaaaactcgtaacacatttcacggaccgtaacacgaaactctacaccccaaaa
aactgtcagtcggttgaaatgccgttcaacgtagagaaaatggcgaaaactatcgggaag
ttagccgaacggaccccagataacggtgagaacgtgagcgggttgttagtgagaaaaggg
ttttcgtatcagataattgcacctgacgatctccacgttttttctcagctttcaaccgct
aacgtcacgcaaaggataacaatcccgtattcgggtgcgtttggtgtgataaaacataga
ctgaaacagatttatgaaagtgttgagtcggtgccggatgaggaaacaggggtgttgact
ttgcaggtgcatgaacgggttaccgtgaggcaagattcagagaatcatctctcgttgcag
tggacagctgacccgataagtgacatggtgtcggattctgttgtagctttggtgttgaat
gcgagtcgggaaatgcctaaagtggttgaagaagtgattaaagatgaaggagttgaagag
ttgaagaagagcgaaaagataattcatgctttgttgttgaatttgtttgggaatgtgaag
tatggggaagacggaaggctggttataacggttgatgataatgtcgcgtatcttgataaa
caaacgggtgaagttgagagtgaaaacgagggtttgaaggaacgggtgaaggttgcgttt
aggaggattcagaccgcggttaagcctattccggtgtcaggtgtttga
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integrated database retrieval system
