Bidens hawaiensis: 143602568
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Entry
143602568 CDS
T11418
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143602568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143602568
03009 Ribosome biogenesis [BR:
bhw03009
]
143602568
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143602568
Spliceosome [BR:
bhw03041
]
Complex A
U2 snRNP components
U2 related factors
143602568
Complex B
143602568
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
143602568
Ribosome biogenesis [BR:
bhw03009
]
Eukaryotic type
90S particles
Helicases
143602568
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
SRP54
T2SSE
Cas3-like_C_2
AAA_30
Flavi_DEAD
AAA_7
PhoH
nSTAND_NTPase5
AAA_29
FtsK_SpoIIIE
NACHT
Motif
Other DBs
NCBI-GeneID:
143602568
NCBI-ProteinID:
XP_076935744
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MTTERKRKVSLFDVVDESAAAKFNKANGLAAVHGGVSTVNKWTGRAYSSRYYEILEKRKT
LPVWHQKEEFLTALKENQTLILVGETGSGKTTQIPQFVLDAVELESADKRKKFMVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRADLKLVVMSATLEAEKFQGYFFGAPLMKVP
GRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDAVRKINKEVG
NLGDSVGPVKVVPLYSTLPPAMQQKIFEPAPAPLTEGGPAGRKIVISTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDQAWCYENFVNHRALKSADNVRQQLARIMARFNL
KLCSTDFNSHDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDVRGEWIVDIAPHYYDLENFPNCEAKRVLEKLYQKREKDKKE
SKNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgaacgcaaacgcaaggtgagtcttttcgacgtcgtggacgagtccgcggcg
gccaaattcaacaaggccaacggcttagccgccgtccacggcggcgtgtcgacggtgaac
aagtggaccgggcgggcgtactcgagccggtattacgagatactggagaagaggaagacg
ttgccggtgtggcatcagaaggaggaatttttaacggcgcttaaggagaaccaaacccta
attttggttggtgagaccggtagcggtaaaacgactcagattccgcaatttgtgttggat
gctgtggaattagagagtgcagataaacgcaagaagttcatggtgggttgcactcaaccc
cgtagggtggctgcaatgtctgtttctaggagagttgcggaggaaatggatgtcactatt
ggagaagaagtgggttacagcatccgttttgaagattgtagcagtgcaaaaaccgtcttg
aagtacttgacagatggtatgctattaagagaagccatgaccgacccgcttctagaaagg
tacaaagtgatcattcttgatgaagcccacgagagaactttagctaccgatgttttgttc
gggcttttaaaagaagttttaaaaaaccgagccgatcttaaattagttgtcatgagtgct
acactggaagccgaaaagtttcagggctatttctttggtgcaccattaatgaaagttcca
ggccgactccacccagtggaaatattttacacccaagaccccgagcgtgactatcttgag
gcagcaatccgaactgttgttcaaatccacatgtgtgagccacctggcgatattctcgtt
tttctcactggagaagaagaaattgaagacgccgttcgaaaaataaataaagaagtcggt
aatcttggagactcggtgggtcccgtgaaagtggtgcctctttattcgacactcccacct
gctatgcaacagaagatattcgagcctgcaccagctcctttaaccgaaggcgggcctgct
gggagaaagattgtgatttcaacaaacattgctgaaacatctttaaccatagacggtatt
gtttatgttatcgatcctggtttcgcgaaacaaaaagtttataatccacgggttcgggtc
gaatctctgttggtttctccaatatcaaaggcgagtgctcaccaaagatcaggtcgtgct
ggaagaacacagcccggtaaatgttttaggttgtacacagaaaaaagttttaataacgat
cttcagccacaaacgtacccggagattcttcggtctaatttggcgaatacggttcttact
ttgaagaaacttggtattgatgatcttgttcatttcgattttatggacccaccagctcct
gaaacgttaatgcgggccctagaggttttgaattatttgggtgcgttggatgatgaagga
aatttgactaaattgggtgaaataatgagtgagtttccgttagatcctcaaatggggaag
atgcttgttgttagccctgaatttaactgttcaaatgagattctttctatatcggctatg
ctgtcagtacccaattgcttcgttcggcccagagaagctcagaaggctgctgatgaggcg
aaagcccgatttggacacatcgatggagaccatctcacgctcttgaacgtctaccacgcc
tacaaacaaaacaatgaagatcaagcatggtgttacgagaactttgtgaatcatcgggca
ctcaaatcagcagataacgtgaggcaacagcttgcccgtattatggcccggttcaacctc
aagttatgcagcacggatttcaacagccatgactattacatcaacatcagaaaagctatg
ttatcaggctattttatgcaggtggcccatttggagcgtacgggtcattatttgaccgtc
aaagacaatcaggtggttcatttgcacccgtcgaattgtttagaccacaagcccgaatgg
gttatatacaatgaatacgtgttaacaagcaggaatttcattcgcactgtaacagatgtc
cgtggtgaatggattgttgatatcgcgccacactactatgatcttgaaaacttcccgaat
tgtgaagcaaaacgcgttctcgagaagctttaccagaaacgggaaaaggataaaaaggag
agcaaaaacagaagatag
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integrated database retrieval system
