Bidens hawaiensis: 143612620
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Entry
143612620 CDS
T11418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143612620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143612620
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143612620
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143612620
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143612620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
143612620
NCBI-ProteinID:
XP_076942679
LinkDB
All DBs
Position
Unknown
AA seq
823 aa
AA seq
DB search
MDDNTTNPKSSTPILDRFKVLLKDREDEARVSIGANDDMLGTGEIVELYEVVLSELVINS
KPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVRHFS
ACLPEVFCAAYRQVHPNQRPSMRHLFGTWSTVFPASVLRKIESQLRFSPSSSLRDSESPR
PAHGIHVNPKYLEKIQHARAASAPKIVEEYESDNRNVVSSHIGTQSMGSTSRVGRTPFSL
GHKQPPSPVLDEYIMADSPKRVVEGASPSRHGYDYRTGVVTAGDEDLRDWRRPHGVTNGF
DVQRPRALISAYGTDERIKASQKLHHGKNLTVNGLGLGSKPGVMTWRNSDEEEFEWENMS
PTLADRGCGNDLFSSASLPGSSKVGQPLHVDRSMPTKTDFGRGDWSIHELLPSVTPNTAV
SLADRGLKRKMPGFQSEPQDSFNLSHGQHHYNSHGQRPHLIDSFQGGSNLPHHLSSSSWR
PPLNMQMPSHPFQKQVNDSFSERRESSQQIPVQNTRFPPQLSLPQEIRPNMIPPTLGYNP
SHLVTRPMIRGYTPQRFDPSAGASLHPVSGMQSSMPFHLGPPPLPPGPPPGPQLLSSIAS
APPAGGAISGLLGSLMAQGFLSLNKPSHEQDSVGLEFDLDVLKTRHESAIAALYEALPRQ
CKTCGLRFKLQEEHSNHMDWHVTKNRVSKNRKQKPSQKWFANVNVWLSSAEALGTDPVPG
FLLPSENVVEKKDDDDMAVPADEDQNVCALCGEPFDDFYSDETEEWMYRGAVYMNAPSGA
TAGMDRSQLGPIVHAKCRSESTVDPPDDSAHNGRAFTEERMRS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggacgataacaccaccaatccgaagtcatcaactccgattctcgaccgattcaaggtt
ctattgaaggaccgagaggacgaagctagggtttcaattggggcaaatgacgatatgctt
ggtaccggagaaattgtggagctttatgaagttgtgttgtcggaattggttattaattcg
aagccgattattactgatctcacgattattgctggtgaacagagggagcatggtgaaggt
attgctgatgcgatttgtgctcggattattgaggttcctgttgaacaaaagcttccttct
ttatatcttctggatagtattgttaaaaatattggtagagaatacgtaaggcacttttct
gcttgtttgcctgaggtcttttgtgcggcatacaggcaggttcacccaaatcaacgccct
tccatgcgccatctttttggtacttggtcaaccgtgtttccagcttctgttcttcgcaag
attgaaagtcaactgcggttttccccttcttcttctttaagagattctgaatctccaaga
cctgctcatggtatacatgtcaatcctaaatacttggagaaaattcaacatgcaagagct
gcttcagctccaaagattgttgaagaatatgaatctgataacaggaatgtggtctcttca
catattggaactcagtcaatggggtcaactagtcgtgtgggccgtacgccttttagtctt
ggacataaacagcctccatcaccagtacttgatgaatatattatggctgattctcccaaa
agggttgttgaaggagcatccccatctcgtcacggatatgattatcgaacaggtgtcgtg
acagctggcgatgaagatctacgtgactggcggagaccacatggtgtaactaatggattt
gatgttcagagacctagagctctgattagcgcatacgggacagatgaaaggattaaagca
agccaaaaacttcaccatgggaaaaacttaactgtaaatgggttaggcttaggtagtaag
cctggtgtgatgacatggcggaactctgacgaagaggagtttgagtgggaaaatatgagt
cccactttagcagaccgtggttgtggtaatgatttgttttcatctgcttcgttacctggt
agctctaaagtaggtcagcctcttcatgtcgaccggtcaatgcctacaaagactgatttt
ggcagaggtgattggtctatccatgagctacttccttcagttactcccaacactgcagtt
tcattggctgatcgtggattaaagcggaaaatgcctggattccaaagtgagccacaagat
tcattcaatctttctcatggtcagcatcactacaattctcatggtcaaaggccccatctc
attgacagctttcaaggtggcagtaatctaccacaccacttatcttcatcatcttggcga
cccccactaaatatgcaaatgccgtctcatccatttcaaaaacaagtaaatgacagtttt
agtgaaaggagagaatccagtcaacaaatcccagtgcagaacactaggttcccaccacag
ttatcactgcctcaagaaattagaccaaatatgataccacctactttaggttataacccg
tctcatttagtaacccgacccatgattcgtgggtacacccctcaaagatttgacccatct
gctggtgcttcattgcatccagtttctggcatgcaatcatctatgccttttcatttaggc
ccacctcctttacccccaggcccacctccaggtcctcaattactttcatcaatcgcctcc
gcccctccagctggcggtgcaatttctggtttattaggttctcttatggctcaaggtttt
ctctcactcaacaaaccgtctcatgaacaggattcagttgggcttgagtttgatcttgat
gttctgaagacgcgccacgagtcagcaatagctgctttatatgaagctctgcccagacaa
tgcaaaacatgtgggctccgattcaagttgcaagaagaacatagtaatcatatggattgg
catgtgactaagaaccgagtatcaaaaaaccgtaagcaaaaaccatctcagaagtggttt
gctaatgttaatgtgtggctgagtagtgcagaggcattgggaactgatccggttccaggg
tttcttcttccttctgagaatgttgtggaaaagaaagacgatgatgacatggcggttcct
gctgatgaggatcagaatgtttgtgcactttgtggagagccgtttgatgatttttacagt
gatgaaacagaagaatggatgtatagaggtgctgtgtacatgaatgctccatctggagca
actgcgggcatggatagatctcagttaggccccatagttcatgctaaatgcaggtctgag
tctactgtggaccctcctgatgattctgcccataatggacgggcatttactgaagagagg
atgcgtagttag
DBGET
integrated database retrieval system
