Bidens hawaiensis: 143613956
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Entry
143613956 CDS
T11418
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143613956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143613956
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143613956
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143613956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
PWI
AAA_19
T2SSE
AAA_30
nSTAND3
SRP54
AAA_7
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
143613956
NCBI-ProteinID:
XP_076943643
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MGSDLKTWVSDKLISLLGYSQPTVVQYMISLAKKASSPSDVFDNLKDMGVSNLNDTRTFA
EELFRKVDRKSSGSNLYRQQEEAAAMLAKKQRTYKLLEADDDDDNGDPGSSVKPKKTDKK
EKRFRKKSEAQEDEDDAGVVNLKEARRVKQKVSRDESDDSESEEERLRDQQERVELERHL
REKDAARTTKLTEQKLSKREEEEAIRRANALEEDDIGALRKVSRQEYLKKREQKKLEEIR
DDIEDEQYLFGNTKLSEVEQRENRYKKQIYDLVQKRSQEDDNINEYRMPDAYDEEGGVNQ
EKRFAVAMERYRDSKDGDKMNPFAEQEAWEDHQIGKATLKYGSKNKTQSENYDFVFEDQI
EFIQGQVMGGVNVDDEAYQEEQEKSMAKSAHEKLLADRKTLPMYPYRESLLQAVEDHQVL
VIVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGY
SIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDI
ARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEINYTKAPEADYLDAAIVTA
LQIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGSKIAELIICPIYANLPTELQA
KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLITPISKA
SANQRAGRSGRTGPGKCFRLYTAYNYFNDLDDNTVPEIQRTNLANVVLSLKSLGIHDLLN
FDFMDPPPAEALLKALELLFALSALNKKGELTKVGRKMAEFPLDPMLSKMIVASEKYQCS
DEIISIAAMLSIGSSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWRETNFSTQ
WCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNPGDLEAIKKAITSGYFPHSAKMQK
NGAYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVSELKPEWLVEIAPHY
YQLKDVEDLASKKMPRGQGRAVRD
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgacttgaagacctgggtgtcagataagttgatctctctcttgggatactca
caaccaactgtggtccaatacatgattagtttagctaagaaagcttcatcaccttctgat
gtgtttgataatctgaaagacatgggggtgtctaatttaaacgacacacgaacttttgct
gaagaactctttcgaaaggttgatcgtaagagttctggatcaaatctttatcgacaacaa
gaagaggctgctgcaatgctagccaaaaagcagaggacttacaagctattggaggctgat
gatgatgacgacaatggtgaccctggcagctctgtgaagcctaaaaagactgacaaaaaa
gagaaacgtttcagaaagaagagtgaagcccaagaagatgaagatgacgcgggagttgtg
aatttgaaagaagcaagacgagttaaacaaaaagtttcacgtgatgagtcagatgattct
gagtctgaagaagaaagactgcgtgatcaacaagaaagggtggagttggagcgtcatcta
agggaaaaagatgctgcaaggaccacaaagctgacagagcagaagttatccaagagggaa
gaagaagaggcaattaggagagccaatgctttggaagaagatgacattggagctttaagg
aaagtttcgaggcaggaatatctcaagaaaagagagcagaaaaaattggaggaaatcaga
gacgatattgaagatgagcagtatctatttgggaataccaaactatcagaagttgaacag
cgtgaaaatagatataaaaagcaaatatatgacctggtgcagaagcggtctcaagaggat
gataacattaacgagtatcggatgcctgatgcttatgatgaagaaggtggtgtaaatcaa
gagaaaagatttgctgtagctatggagcgttacagagactcaaaagatggagataagatg
aatccatttgctgaacaagaagcatgggaggatcatcagattggtaaagcaacactaaag
tacgggtcaaagaacaaaacgcagtccgaaaattacgatttcgtgtttgaggaccagatc
gagttcatacagggtcaagtcatgggtggtgtaaatgttgatgatgaagcatatcaagag
gaacaggaaaaatcaatggcaaaatcagcgcatgagaagcttctggctgacagaaaaact
ttacctatgtatccctatcgggaatcattgctccaagctgttgaagatcatcaggttctt
gtcattgttggtgagaccggttctgggaagactactcagataccacaatatctccatgaa
gctggatacaccaaacgtggaatgatcgggtgtacacagccaagacgagttgctgcgatg
agtgttgctgctagagtttctcaagaaatgggagtcaaactcgggcatgaggttggctat
tcaatacgttttgaagactgcacctctgacaagacagtgctcaaatatatgactgatggc
atgttacttcgagagtttcttggtgaacctgatcttgcaagttacagtgttgtgatggtg
gatgaggctcacgagaggacattgtcgaccgatatcttgttcggtttagttaaggatata
gctcggtttcgtcccgacctcaagttactcatctcaagtgccactcttgatgccgagaaa
tttagtgactatttcgattctgccccaattttcaaaattcccggaagaagatttcccgta
gagataaattacaccaaagcacccgaagctgattacttggatgctgcaattgtcacagct
cttcagattcatgtcactcagccacctggcgatggtgacatactggtcttcctcaccggt
caggaggagatcgaaacagccgaagagatccttaagcaccgaacccgtgggttaggtagc
aaaatagcagaactaataatatgccccatttatgcaaatctcccaactgaacttcaagcc
aagatatttgaaccaactcccgaaggggcccgcaaggtggtccttgctactaacattgca
gaaacatcattaacaattgatggtattaaatacgtgatcgacccgggtttcgttaagatg
aaatcttacaacccgcgtacgggaatggagtcgttactcatcactcccatttcaaaagca
tctgcaaatcaacgagctggtcgatctggacgaacagggcccgggaagtgttttagactg
tacactgcttacaattattttaatgatttagatgataacacggttcccgagatccaaaga
accaacctcgccaatgtggttctcagtttgaagagtctcgggatccatgatttgttgaac
tttgactttatggatccaccgcctgctgaggctttacttaaagctttggagctgcttttt
gcgttaagtgcacttaataaaaaaggtgagttgacaaaagtgggtagaaagatggctgaa
ttcccacttgatcctatgttgtctaagatgattgtcgcatctgagaaatatcaatgctcg
gatgagattatttcaattgctgccatgctgtcgatcggtagttctattttttatcgtccg
aaagataaacaagttcatgctgataatgcgcgtttgaattttcatatgggtaatgttgga
gatcacatcgctttgcttaaggtttacagttcgtggagagaaacaaacttttctactcag
tggtgctatgagaattacatccaggtcaggagtatgaagcgggcccgagacataagagat
cagttggaggggcttctagaaagagttgaaatcgagttaacatcgaacccgggagatttg
gaagcgatcaagaaggccataacctcaggatacttccctcactcagcaaagatgcaaaag
aatggtgcttacagaaccgttaaacatcctcagacggtttatatacatcccagctctggt
ttagctcaggtacttccaaggtgggtggtataccacgagctagtgctgacaaccaaggag
tatatgcgacaagtgagcgagctaaaacccgagtggcttgtggaaatagcgcctcattat
tatcagctcaaggatgttgaagatttggcgtcaaagaaaatgccacgtggacaaggtcgt
gcagtcagggattga
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integrated database retrieval system
