Bidens hawaiensis: 143616326
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Entry
143616326 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143616326
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143616326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143616326
03041 Spliceosome [BR:
bhw03041
]
143616326
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
143616326
Spliceosome [BR:
bhw03041
]
Complex B
Other components
Prp19-related factors
143616326
Complex C
143616326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
143616326
NCBI-ProteinID:
XP_076945304
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MSMIPSELYPSQDDLQYEEELLRNPFSLKLWWRYLIARSQSPFQKRAIIYERALKALPGS
YKLWLAYLRERLELVRNLPITHSQYQTLNNTFERALVTMHKMPRIWIMYLTSLTEQKLVT
KTRRTFDRALCALPVTQHDRIWEPYLVFVSQRGVPIETALRVYRRYLKYDPGHIEDLIEF
LLRSGLWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCELLTQHATEVSGLNVDAIIRG
GIRKFTDEVGRLWTSLADYYIRRKLLEKARDVFEEGMTTVVTVRDFSVIFDAYSQFEESV
LALKMEGMDESEDEDEEEGENNGNDEEDDRLNVTKLEHKLKRFWLCDEKDVDLRIARLEH
LMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTIDPMKAVGKPHT
LWVAFAKLYEAHNDIANARVIFDKAVQVNYKAVDNLASVWCEWAEMELRHKNFRGALELM
RRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRVVYERILDL
RIATPQIIINYAMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKL
ERSRELFEHAVEMAPAEVVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKLSMYE
IYIARAAEIFGVPKTREIYEQAIVSDGLPEKDALKMCIKYAELEKSLGEIDRARKIYVYA
SWLADPRPVGEFWTKWNEFEVKHGNEDTFRDMLRIKRSVAARHSQTHAMLPEYLMQKANG
DETGSKKIEEDEMAALERKVAPAAATNIATDDTNTARFVHGGVQLSEKESGLIHNREEIE
LPDGSGSDEDEEDNDGKIEIKQKDVPEAVFGGLIRKRDEEEAKEKEGENGDGGSRLGALE
RIKRMRQG
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgattccgtcggagctgtacccgagccaagacgacctccaatacgaagaagaa
ctcctccgtaaccccttcagcctcaagctctggtggcgttacctcatcgcccgttcccaa
tcacccttccaaaagcgagccatcatctacgaacgggccttgaaggccttgcccggcagc
tacaagctctggctcgcctatctccgcgaacgcctcgaactggtacgtaatctgcccatc
actcattcgcaataccaaaccctaaacaacaccttcgaacgagccttggtcactatgcat
aaaatgcccaggatttggattatgtatttgactagcttgacggagcagaagcttgttacc
aagacgcgcaggacgttcgaccgggcgctgtgcgcgttgccggttacgcagcatgatagg
atttgggagccgtatttggtgtttgtgagccagcggggtgtgccgattgagacggcgttg
agggtttataggcggtatttgaagtacgatccggggcatattgaggatttgattgagttt
ttgttgcggtcggggttgtggcaggaggcggcggagcggttggcgggggtgttgaatgac
gatcggttttattcgattaaagggaagacgaagcatcggttgtggttggagctttgtgag
ctgctgacgcagcatgcgacggaggtgtcggggttgaatgtggatgcgattattagaggg
gggattaggaagtttacggatgaggtggggcggttgtggacgtcgttggcggattattat
attaggaggaagttgttggagaaggcgagggatgtgtttgaggaagggatgacgaccgtt
gttacggttagggattttagtgtcatttttgatgcgtattcgcagtttgaagagagtgtg
cttgcgttgaagatggaaggtatggacgagagtgaagatgaagacgaagaggaaggtgaa
aacaatggtaatgatgaagaggatgatcggcttaatgtgacgaaactagaacacaagctt
aaaagattttggttgtgtgatgaaaaggatgtggatttaaggatagcaagattagagcat
cttatggataggagacccgagcttgctaacagtgttcttctacgccagaatccgcataat
gttgaacaatggcataggcgagtgaagatctttgaaggcaatccaactaagcagatatta
acgtataccgaggcggtgagaacaattgaccccatgaaagctgttggaaagcctcatact
ttatgggttgcgtttgctaaactgtatgaagctcataatgatattgctaatgcacgggtg
atatttgataaagctgtgcaagttaactataaagcggttgataatcttgctagtgtatgg
tgtgaatgggctgagatggaacttagacataaaaactttagaggtgcgttggagttaatg
aggcgtgcgacagctgaaccgtctgttgaggttaaacgcagagtggctgctgatggcaat
gaaccagttcaaataaagttacacaaatctttaagactttggacgttttatgttgatttg
gaggaaagtttaggcactttggaatccacacgcgtggtttatgagagaatcttggatctt
cgtattgccacaccacaaattattataaactatgcaatgctgttagaggataataagtac
ttcgaggatgcttttaaggtctacgaacgaggcgtgaaaatattcaaatatccacacgtg
aaagacatttgggtcacatatctttcaaaatttgtcaaacgatacgggaaatccaagctt
gaaagatcccgagagctatttgagcatgctgttgaaatggcacctgctgaagttgtaaag
ccattatatctacaatatgcaaaactagaagaggattatggtttagctaaacgggccatg
cgcgtttatgatcaagcaacgaaagcggtcccaccaaacgaaaaactgagcatgtacgaa
atatacatagcgcgagcagctgagatatttggagttccaaaaactcgggagatttatgag
caagcgattgtgtcggatgggcttccagaaaaggatgcactgaagatgtgtatcaagtat
gctgagctggaaaagagtttgggggaaattgaccgtgctcggaagatatacgtttatgcg
tcttggttggcggacccgcggcccgttggtgagttttggactaagtggaacgagtttgaa
gtaaagcatggtaatgaggatacttttagagatatgcttcgtattaagagaagtgttgcc
gcaagacatagccagacacacgcgatgctaccagagtacttaatgcagaaggctaatggt
gatgaaaccggatcaaagaaaattgaagaagatgaaatggctgctttagaaagaaaagta
gcgcctgccgccgctactaatattgccaccgatgacaccaacactgctagatttgtgcat
ggcggtgtacagctgtcagaaaaggagtcgggattgattcataacagggaagagattgag
ctgcccgacggaagtggaagtgatgaagatgaagaagataatgatggcaaaattgaaatt
aaacagaaagacgtgccggaagctgtgtttggagggctgattaggaaaagggatgaagaa
gaagcgaaggaaaaagagggtgaaaatggagatggtggaagccggcttggagcgcttgaa
cgaattaagcgtatgcgccaaggttag
DBGET
integrated database retrieval system
