Bidens hawaiensis: 143616866
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Entry
143616866 CDS
T11418
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143616866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143616866
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143616866
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143616866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
T2SSE
AAA_30
nSTAND3
SRP54
AAA_7
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
143616866
NCBI-ProteinID:
XP_076945708
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MLVRKQRTYKLLEADDDDDNGDPGSSVKPKKTDRKEKRFRKKSEAQDDEDDEGAVNLKKA
RRVKQKVSRDESDDSESEEERLRDQQEREELERHLREKDAARTTKLTEQKLSKREEEEAI
RRADALEEDDIGALRKVSRQEYLKKREQKKMEEIRDDIEDEQYLFGDAKLTEVEQRENRY
KKQIYDLVKKRSQEDDNINEYRMPDAYDEEGGVNQEKRFAVAMERYRDSKDGDKMNPFAE
QEAWEDHQIGKATLKYGSKNKTQSENYDFVFEDQIEFIQGQVMGGENVDDEAYQEEQEKS
MAKSAHEKLLADRKTLPVYPYRESLLQAVEDHQVLVIVGETGSGKTTQIPQYLHEAGYTK
RGMIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRE
FLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYF
DSAPIFKIPGRRFPVEINYTKAPEADYLDAAIVTALQIHVTQPPGDGDILVFLTGQEEIE
TAEEILKHRTRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLT
IDGIKYVIDPGFVKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYN
YFNDLDDNTVPEIQRTNLANVVLSLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSAL
NKHGELTKVGRKMAEFPLDPMLSKMIVASEKYQCSDEIISIAAMLSIGSSIFYRPKDKQV
HADNARLNFHMGNVGDHIALLKVYSSWRETNFSTQWCYENYIQVRSMKRARDIRDQLEGL
LERVEIELTSNPGDLEAIKKAITSGYFPHSAKMQKNGAYRTVKHPQTVYIHPSSGLAQVL
PRWVVYHELVLTTKEYMRQVS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcagaaagcagaggacttacaagctactggaggctgatgatgacgatgacaat
ggtgaccctggcagctctgtgaagcctaaaaagaccgacagaaaagagaaacgtttcaga
aagaagagtgaagcccaagacgatgaagatgacgagggagctgtgaatttgaaaaaagca
agacgagttaaacaaaaagtttcacgtgatgagtcggatgattctgagtctgaagaagaa
agactgcgtgaccaacaagaacgagaggagttggagcgtcatctaagggaaaaagatgct
gcaaggaccacaaagctgacggagcagaagttatccaagagggaagaagaagaggcaatt
aggagagccgatgctttggaagaagatgacattggagctttaaggaaagtttcaaggcag
gaatatctcaagaaaagagagcagaaaaaaatggaggaaatcagagatgatattgaagac
gaacagtatctatttggggatgccaaattaacagaagttgaacagcgtgagaatagatat
aaaaagcaaatatatgacctggtgaagaagcggtctcaagaggatgataacattaacgag
tatcggatgcctgatgcttatgatgaagaaggtggtgtaaatcaagagaaaagatttgct
gtagctatggaacgctacagagactcaaaagatggagataagatgaatccatttgctgaa
caagaagcatgggaggatcatcagattggtaaagcaacactaaaatatgggtcaaagaac
aaaacgcagtccgaaaattacgattttgtgtttgaggaccagatcgagttcatacagggt
caagtcatgggcggtgaaaatgttgatgatgaagcatatcaagaagaacaggaaaaatca
atggcaaaatcagcgcatgagaagcttctggctgacagaaaaactttacctgtatatcct
tatcgggagtcactgctccaagctgttgaagatcatcaggttcttgtcattgttggtgag
actggttctgggaagaccactcagataccgcaatatctccatgaagctggatacacgaaa
cgtggaatgatcgggtgtacacagcctagacgagttgctgctatgagtgttgctgctcga
gtttctcaagaaatgggagtcaaacttgggcatgaggttggctattcaattcgttttgaa
gactgcacttctgacaagacagtgctcaaatatatgactgatggcatgttactacgagag
tttcttggtgaacctgatcttgcaagttacagtgttgtgatggtggatgaggctcatgag
aggacattgtcgactgatatcttatttggtttagttaaggatatagctcggtttcgtccc
gacctcaagttgctcatctcaagtgccactctcgacgccgagaaattcagcgactacttt
gattctgccccaattttcaaaattcccggaaggcgatttcctgttgaaataaattacacc
aaagcacccgaagctgattacttggatgctgcaattgtcacagctcttcagattcatgtc
actcagccacctggcgatggtgacatactagtctttctcaccggtcaggaagaaatcgaa
acagctgaagagatccttaaacaccggacacgaggattaggtagtaaaatagcggaactc
ataatatgccccatttatgcaaacctcccaactgaacttcaagcaaagatatttgaaccg
actcccgaaggggcccgcaaggtggtccttgctacgaacattgcagaaacatcattgaca
attgacggcattaaatatgtgatcgacccgggtttcgttaagatgaaatcttacaacccg
cgtacgggaatggaatcattactcgtcactcccatttcaaaagcatctgcaaatcaacga
gcgggtcgatccggacgaacgggacccgggaagtgttttagactgtacactgcttacaac
tattttaacgatttggatgataacacggttcccgagatccaacggaccaaccttgccaac
gtggttctcagtttgaagagtctcgggatccatgatttgctgaactttgactttatggac
ccaccgccagctgaggcgttacttaaagctttggagctgctttttgcgttaagtgcactt
aataaacacggtgagttgacaaaagtgggtcgaaagatggctgaattcccgcttgatcct
atgttgtctaagatgattgttgcatctgagaaatatcagtgctcggatgagattatttca
attgctgccatgctgtcgatcggaagttctatattttatcgtccgaaagataaacaagtt
catgcggataatgcgcgtttgaattttcatatgggtaatgttggagatcatatcgcactg
cttaaggtttacagttcgtggagagaaacaaacttttctacacagtggtgctatgagaat
tacatccaggtcaggagtatgaagcgggcccgagacataagagatcagttggaggggctt
ctagaaagagttgaaatcgagttaacatcgaacccgggagatttggaagcgattaagaag
gccataacctcaggttacttccctcactcagcaaagatgcaaaagaatggtgcttacaga
accgttaaacatcctcagacggtttatattcaccccagctctggtttagctcaggtactt
ccaaggtgggtggtataccacgagctagtgctgacaaccaaggagtatatgcgacaagtg
agctag
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