Bidens hawaiensis: 143617405
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Entry
143617405 CDS
T11418
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03013
Nucleocytoplasmic transport
bhw03015
mRNA surveillance pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143617405
09122 Translation
03013 Nucleocytoplasmic transport
143617405
03015 mRNA surveillance pathway
143617405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143617405
03041 Spliceosome [BR:
bhw03041
]
143617405
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143617405
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143617405
Spliceosome [BR:
bhw03041
]
Complex C
Other components
EJC/TREX
143617405
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143617405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
143617405
NCBI-ProteinID:
XP_076946092
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MGETENDYEDELLDYEEEDDKATDSAPLKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLC
HTRELAYQICHEFERFSTYLTDIKVAVFYGGVNIKIHKELLKNECPHIVVGTPGRVLALA
RDKDLALKSVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQIDT
STYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggggaaacagagaacgactacgaggacgagcttctcgattacgaggaagaggacgac
aaggccaccgattccgcccctcttaaagtcaacggcgaagccgttaagaagggctatgta
ggaattcacagttccggattcagagattttcttttgaagccagagctacttcgtgctatt
gtggattcagggtttgaacatccttctgaagtgcaacacgagtgcataccacaagctatt
ctgggaatggatgttatctgtcaagcaaagtctggtatgggcaagactgctgtttttgtc
ttgtcaactctgcagcaaattgagcctgttgctggtcaagtagctgcccttgttttatgt
cacacaagagaattagcttatcagatctgtcatgagtttgaaagattcagcacttatctg
actgacatcaaggttgcggtcttttatggtggcgttaacatcaaaattcacaaggagctt
ctgaagaacgagtgccctcatattgttgtcgggacacctggaagggtcctcgcacttgct
agagacaaagatcttgcattgaagagtgtgaggcactttatactagatgagtgtgacaag
atgctcgagtcacttgatatgaggagagatgtgcaagaaatcttcaaaatgacacctcat
gataaacaagttatgatgttttcggctacactcagcaaggagatccgccccgtctgcaaa
aagtttatgcaagatccaatggaaatttatgttgatgatgaagccaagttgacccttcat
ggacttgtacagcactacatcaaattaagcgagctggagaagaaccgtaagctgaatgat
ctgctcgacgcgctagattttaatcaagtggtgatatttgtcaaaagtgtaagcagagca
gctgagctcaacaaattgctcgtggagtgtaatttcccttcaatctgcatccattctggc
atgtcccaggaagaaaggctgacacgctacaagggatttaaggaaggacacaagagaatc
ttggtggcaacagatttagttggtcggggtattgatattgaacgtgtgaacattgtcata
aattatgacatgccagattctgctgacacttatctccatcgtgttggtagagctggaagg
tttggaaccaaaggtcttgcaatcacatttgtgtcttcagctgccgactcagatgttctt
aatcaggttcaggagaggtttgaagtggatattaaagagcttcctgagcagatcgatact
tcaacttatatgccttcgtag
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