Bidens hawaiensis: 143618031
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Entry
143618031 CDS
T11418
Name
(RefSeq) DNA damage-binding protein 1b-like
KO
K12830
splicing factor 3B subunit 3
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143618031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143618031
03041 Spliceosome [BR:
bhw03041
]
143618031
03036 Chromosome and associated proteins [BR:
bhw03036
]
143618031
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
143618031
Spliceosome [BR:
bhw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
143618031
Complex B
143618031
Complex C
U2 SnRNP specific factors
143618031
Chromosome and associated proteins [BR:
bhw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
143618031
TFTC complex
143618031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
143618031
NCBI-ProteinID:
XP_076946494
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MAVAEEESSSNNSRPVIPQGATNYIAKRVLKGSAVLQVVYGHIRSHSSFDIVFGKETSLE
MVMIDDNGVLQSVCDQPIFGTIKDIAVLPWNKRFRRAIPQLQGKDLLLVTSDSRKLSVLS
FHTEMHRFFALCHIPLSSSGGSLRHQIGRMLTVDTNGCFIASSAFEGHLALLKVSSSTSA
DIIDKKIFCPSDNEKSISTSMGVSVIHGTIWSMCFISKDMSQFSEEHDPLLAVLINRKGS
LHNELLLLEWNAKDNCVNVLSQYAEPGPLALDIVEVPYSYGYAFLFRVSDALLMDLRDPH
NPSCVYRTSLNFLPSALDDHTFILESYRNNDVDEEGNICNVAASALLELKDIIKDDDPMN
IDDDNAYSSKSTSNRVCSWCWEPGNFVNPRMIFCVDTGELFMVEIYSESNGLKVNLSDCL
YKGSPFKELLWTENGYLTALAEMSDGMILEFEGGKLNYKSPIQNISPILDMSLVDYHDEK
HEQIFACCGMAPEGSLRVIRNGVSLEKLLKTAPDYQGITGTWTVKMKVTDCYHSFLVLSF
VEETRVLSVGVSFTDVTDSVGFRPDVCTLACGLIRDGLLVQIHQTAVRLVVPTTTAHPDG
IPCPSPTYTSWSADTGINLGAIGNNFIVVSTSNPCHLYILGVRRLERFQYEVYQMQNVRL
EHELSCISIPQKLIEEDDLSDYPVDYIKVDPTHAVKLGNTFVIGTHRPSVEIISFKPGQH
GFKALAVGAISLVNSTGTTISGSIPQDVRLVKADRLYILSGLRNGMLLRFEWPLPYADSV
NSMRSSLSSGVVNDSCPVNLDLISIRRIGITPAFLVPLNDHLDADIIALSDRPWLLQTAR
HSLSLTSISFQASTHATAVCSSECPNGVLFVSENSLHLLEMMHNKRLNVQKFPLGGTPRK
ILYHAESKLLLVLRTDLSDDSCSSDICCVDPASGSVLSSFKLDVGETGKCMELLKAGGEH
VLVVGTSLSSGPAIMSSGEAESTRGRLIVLCLEHKQNSDSGSMTFYSKGGGSSSQRTSPF
REISGYGTDSLCSSPDDNSFDETESWNLRLAYSTNMRGIVLAICSYLDCYFLASAGNAFY
VCSFQSDNFPRVKRLAVGRTRFMIMTLTTHFTTIAVGDCRDGVLLYAYSEDSKKVEQLYS
DPVQRLIADCHLVNVDTAIVSDRMGSVAIVSCSHHLGDNASPECNLKVCSSFYMGETVMS
IKKGSFSHKLLADDEMRDGDIASSIMDLSQSNTIVASTLLGSIIVFIPISRDEYELLKDV
ESRIAEHSLTAPILRNVHELFRSRQSPVGAERILDGDMLGQFLDLTNAQQEDILAVPEDP
LAMYRTIQKPQLKKLNVSKVVRLLERVHCAIN
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgccgaggaggaatcgtcgtcaaacaactcgcggccggtgatccctcaaggc
gccactaactacatagccaaacgtgtcttaaaaggcagcgccgtgctgcaagtcgtttac
ggtcacatccgatcgcattcgtctttcgatatcgtcttcggaaaggaaacatcattagag
atggtgatgatagatgataatggagttttgcaatctgtatgtgaccagcctatttttggg
acaattaaagatatcgcggtgcttccatggaataaacggtttcggagagcaatccctcaa
ttacaaggaaaggatcttttgcttgtcacttcagattctagaaaactttcagttctgtca
ttccatactgaaatgcataggtttttcgctttgtgtcatattccgctatctagctcaggt
ggaagcctaaggcatcaaattggaagaatgttgactgtcgataccaatggctgtttcatt
gctagcagtgcatttgagggccatctggctctgctcaaagtttctagctccactagtgct
gacatcatcgataagaaaatattttgtccttctgataatgagaagagtataagcacaagc
atgggggtttctgttatacatggtactatatggagcatgtgttttatctcgaaagatatg
agtcaatttagcgaggagcacgaccctttgttagccgttcttataaatagaaaggggtca
ctacataacgagcttttgttattagagtggaatgctaaggacaattgtgtcaatgtactt
tctcaatatgctgagcctgggccactagcacttgatatagttgaagttccatattcttat
ggttatgcattcctctttagagttagtgatgctcttttaatggatcttagggacccacac
aacccttcatgtgtatatagaacaagcctaaactttttaccctcggcattggatgatcat
actttcattttggaatcatataggaataatgatgttgatgaagaaggaaatatttgtaat
gttgctgcatctgctcttttggagctaaaagacataattaaagatgatgatcccatgaat
atagatgatgataatgcttattcatcaaagtcaacatccaatcgtgtttgctcgtggtgt
tgggaacctggaaatttcgtaaacccgagaatgattttttgtgtggataccggtgagctt
tttatggtcgaaatttattcagagtcaaacggtcttaaagtcaacctttctgattgtctt
tataaaggttcaccattcaaagagcttttatggactgaaaatggttatttgacagcactt
gcagaaatgagtgatggtatgatattagaatttgaaggcggaaaactaaattacaaaagc
ccgattcaaaatatttcacctattctagatatgtcacttgtggattatcatgatgagaaa
catgagcaaatttttgcttgttgtgggatggcacctgaagggtcactaagagttatccga
aacggtgttagtttagaaaagcttttgaaaactgccccagattatcaagggataacgggt
acttggacggtaaaaatgaaagtaactgattgttatcattcttttcttgtgctatcattt
gtagaagaaacgcgggtgctttcagttggtgtaagttttaccgatgtaaccgattcggtt
ggctttcgacccgatgtatgcactttagcatgtggtcttatccgtgacgggttgctggtt
cagattcatcagaccgcggttaggcttgttgtacctacaactacagcccatcctgatggc
attccgtgcccgtctccaacttacacatcttggtctgctgacactggcattaacctcggg
gctataggaaataacttcatagttgtttcaacatcaaatccgtgtcacttatacattctc
ggtgttaggcgattggaaaggtttcaatatgaagtttaccaaatgcaaaatgtcagattg
gagcacgaattgtcgtgcatttcaattcctcaaaaacttatagaagaagatgatctgtct
gactaccctgttgactacattaaggttgaccctacacatgcggtcaaacttggaaataca
tttgttattggaacacacaggccttcagttgagattatatcttttaaacctggtcaacat
ggctttaaagctcttgcggttggagccatttcgttagtaaacagcactggaacaaccatc
agtggttctattcctcaagatgtaagactcgtaaaagcagaccgactttatattctctca
gggttgagaaacggtatgctgcttagatttgaatggccgctaccttacgctgattcagtt
aattctatgcgttcttctttaagttctggggtggtaaatgacagctgtccggttaacctt
gatttgatttcaattcgccgaatcggtatcacaccggctttcttggttccattaaatgat
catctggatgctgatattattgctcttagtgacagaccttggttgttacaaactgccaga
catagtctttctttaacttccatctcatttcaagcatccacacatgcaaccgctgtatgt
tcaagtgaatgtccaaacggggttttatttgtgtcagaaaatagcctccacttgttggag
atgatgcacaacaagagattaaatgtccaaaagtttcctcttggcggtacgccacgaaag
attttataccatgctgaaagcaaattgctgctggttttgaggacagatttgagtgatgat
tcgtgttcatctgatatttgttgtgtggaccccgcgagtggttcggttttatcttctttt
aaacttgatgttggagaaaccgggaagtgcatggaattattaaaggcagggggtgagcat
gtattggttgttggtactagtctctcatcaggtcctgctataatgtccagtggggaagct
gaaagtacaagagggagattgatagtcctgtgtctggagcacaaacaaaactcagatagc
ggttcaatgacattttattcaaaaggtggcggttcatcttctcaaagaacgtcccctttt
cgggaaattagtggttatggaaccgatagtctgtgcagcagccctgatgataatagtttt
gatgaaaccgaatcatggaacttaagattagcttattctactaacatgcgtgggattgta
cttgccatctgttcttatctcgactgttatttcttggcctctgctggcaatgctttttat
gtgtgcagctttcagagcgataattttccgagggtaaaaagattggcggttggaaggaca
cgatttatgatcatgacattgacaactcactttactacaattgctgttggtgattgtcgt
gacggcgttcttttgtatgcatatagtgaggattctaagaaagtggagcaactgtatagt
gaccctgtgcagagattgattgctgattgccatcttgtgaatgttgatacggctattgtt
tctgatcgcatgggaagcgttgcaattgtgtcgtgttcacaccacttgggagataatgca
agcccggagtgcaacttgaaggtttgttcttccttctatatgggcgagactgtaatgagc
attaaaaagggctccttttcgcacaaacttcttgctgatgatgaaatgagggacggtgac
attgcaagttcaattatggatttatcacaaagtaatactatagtggcaagcacattgtta
ggaagcataatagtctttatccctatatcaagggacgaatatgagcttttgaaagacgtg
gaatcaaggattgctgaacactcgttgaccgctcctattctccggaatgttcatgaattg
tttcgcagccgtcaaagcccggtgggtgcagaaaggattcttgatggggatatgttaggg
cagtttttggaccttacaaatgcccaacaagaagatatattagctgtacctgaagacccg
cttgcgatgtacagaacgatacaaaagccacagcttaaaaagcttaatgttagcaaggtt
gttaggcttcttgaacgcgtgcactgtgctataaactga
DBGET
integrated database retrieval system
