Bidens hawaiensis: 143618116
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Entry
143618116 CDS
T11418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143618116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143618116
03041 Spliceosome [BR:
bhw03041
]
143618116
03009 Ribosome biogenesis [BR:
bhw03009
]
143618116
03016 Transfer RNA biogenesis [BR:
bhw03016
]
143618116
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143618116
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143618116
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143618116
Complex C
U4/U6.U5 tri-SnRNP related factors
143618116
Ribosome biogenesis [BR:
bhw03009
]
Eukaryotic type
Pre-60S particles
Helicases
143618116
Transfer RNA biogenesis [BR:
bhw03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143618116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143618116
NCBI-ProteinID:
XP_076946550
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MGSVKRKSLDEGPSNHSPPPHKQHKDNNEVDTTVACVHDVSYPDNYVTPPRRPLTDQDSK
PAKEFPFTLDPFQSEAVNCLNAGESVMVSAHTSAGKTVVASYAIAMSLKNKQRVIYTSPI
KALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSELTREVAWIIF
DEVHYMRDRERGVVWEESIVMAPKNTRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDY
RPTPLQHYLFPTGGDGLYLVVDEKGKFREDSFQKALNALVPVNEKKDGGKFQKGLVNGRG
GENSDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDDEKANTETIFWSAM
DMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG
LNMPAKTVVFSNVRKFDGDKFRWLSGGEYIQMSGRAGRRGIDDRGVCILMVDEKLEPSTA
KMMVKGSADCLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFYQFQADRAIPDLERQMKVL
QDERDSIQIEEEDSLEDYYSLLQQYKSYKKDVRDIIFSPRYCLPFLQPGRLVCVRCTNDD
ESTLAFSIEDRVTWGVIVNFQRVKSLSEDDVDKRPEDANYTVDVLTRCVVSKDELSKKTI
KIIPLKDPGEPAVVSVPISQIDNLSSVRLVIAKDLLPRENRENTLKKVSEILSRFSKQGM
PLLDPEEDMKVKSGSYRKAVRKIEALESLFEKHEVAKSPLIEQKLKALHKKKQITAQIKL
IKKSMRSSSALAFKDELKARKRVLRRLGYATRDDVVELKGKVACEISSADELVLTELMFN
GVFKDIKVEEMVSLLSCFVWQEKLQDAQKPREELNMLFTQLQDTARRVAKVQLECKVEID
VESFVNSFRPDIMEAVYSWAKGSKFYEIMEVTQVFEGSLIRGIRRMEEVLQQLILAAKSI
GEVELEAKFEDAVSKIKRDIVFAASLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggatcagtaaaaagaaaatcattagacgaaggcccttcaaatcattcacccccacca
cacaaacaacacaaagacaacaacgaggttgacacaacagttgcctgtgttcatgacgta
tcatacccggataattacgtcactcctcctcgccggcccctcaccgaccaagattcaaaa
cccgccaaggaattcccatttaccctcgacccttttcagtccgaagctgttaattgcctc
aatgctggagaatctgtcatggtgtctgcacacacatcagctgggaaaactgttgtggca
tcttatgctattgcaatgtcactgaaaaataagcagagagtaatatacacctcacctatt
aaggcactgagtaatcagaagtatagagagtttaaggaagagttttcggatgtcggtttg
atgaccggagatgttacgattgagcccaatgcttcttgtttggtgatgactacggaaatc
tggcgtagtatgcagtacaaggggtcagagcttacacgtgaggtggcgtggattattttt
gatgaggtgcattatatgcgagatagagaacgaggggtggtttgggaagaaagtattgtc
atggcccctaaaaacactcgttttgtgttcttatctgctacggtaccaaatgctaaggag
tttgctgactgggttgcgaaggttcatcaacaaccgtgtcatattgtttatacggattat
cgaccgacaccgcttcaacattatctttttcctacgggtggtgatggtttatacttggtg
gtggatgaaaagggaaagtttcgtgaggatagttttcaaaaagccttaaatgcccttgtt
cccgttaatgagaagaaagatggtgggaagtttcaaaaggggttggttaatggtagaggt
ggggaaaatagtgacatatttaaaatggtgaaaatgatcattcaacgccaatatgatccc
gttattatctttagttttagcaaaagggaatgtgaattccttgcaatgcagatggcaaaa
atggatctaaatgatgatgatgagaaagcgaacaccgaaacaatcttttggagtgctatg
gacatgttatcagatgatgataagaagctaccacaggtgtctaatatgcttcccctcttg
aagcgtggaataggcgtgcatcattctggattgctccccatactgaaagaagtcattgaa
atattattccaagaaggtctaattaagtgtttgtttgccacagagacatttagcataggt
cttaacatgcctgcaaaaacggttgttttttcaaatgttcggaagtttgatggagataaa
ttcagatggctatcaggtggtgaatatattcaaatgagtggccgtgcgggtcgtagagga
attgatgatcgtggtgtctgtattcttatggttgatgaaaaattagaaccttcaactgct
aaaatgatggttaaagggagtgcggactgtttgaacagtgccttccatttaagctacaac
atgcttttgaatcaattgagaagtgaagacggtgatcctgaaaacttgcttcgtaattcg
ttctatcaatttcaagctgaccgagctatccctgatcttgagagacaaatgaaggttcta
caggacgaaagggactcgattcaaattgaagaggaggatagtttagaagattattattca
ttattgcagcaatataaaagctataagaaggacgtgcgtgacatcatattttctcctaga
tattgcttgccatttttgcagcctggcaggcttgtatgtgtccgttgcacgaatgatgac
gaaagtacccttgccttttcaattgaggatcgagtcacatggggtgttatagtcaacttt
caaagagtcaagagtctttcagaagatgatgtggacaaacgcccggaagatgcaaattac
acagtggatgttctaacaagatgtgttgtgtctaaggatgaactttccaagaaaacaatt
aagatcattccgttaaaggatcccggggaaccggctgttgtttctgttcctatttctcag
atagataacttgagtagtgtgcggctcgtaatagcaaaggatcttttgccacgggaaaat
agggaaaataccttaaaaaaggtgtctgaaattctctcaagattttctaaacaaggaatg
cccctattggaccctgaagaagacatgaaggttaaaagtgggtcatataggaaggcggtc
cggaagattgaagccctagagagcctgtttgagaaacatgaagttgcaaaatctccactt
attgagcaaaagttgaaagcgctgcacaaaaagaaacaaattactgctcaaatcaagttg
attaaaaagtcaatgcggtcttcctctgcactcgcatttaaagatgagctcaaagcaaga
aaacgggttcttcggagacttggatatgcgactagagacgatgttgtggaattgaagggg
aaagttgcttgtgaaattagtagcgcggatgaattggtattaacagagctcatgtttaat
ggtgtttttaaggacataaaagtagaagaaatggtttctcttttatcttgttttgtgtgg
caagagaagcttcaagatgctcaaaagccgagggaagaactcaacatgctttttacacaa
ttgcaagatactgcacgaagggtagctaaagttcaactagagtgcaaggttgaaattgac
gtggagagctttgtgaattcgtttcggcctgatattatggaggctgtttattcatgggca
aaagggtcaaaattttacgagataatggaagtaacccaagtatttgaaggcagtttgatc
agaggtattaggaggatggaagaagttcttcagcaattaatattagctgcaaagtcgatt
ggcgaagttgaacttgaagccaaatttgaagatgcggtttcgaagatcaagagagatatt
gtgtttgcagcctcattatacttgtag
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