Bidens hawaiensis: 143625481
Help
Entry
143625481 CDS
T11418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143625481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143625481
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143625481
Spliceosome [BR:
bhw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143625481
Complex C
U5 SnRNP specific factors
143625481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143625481
NCBI-ProteinID:
XP_076951911
LinkDB
All DBs
Position
Unknown
AA seq
1794 aa
AA seq
DB search
MLLVSERITDYTDAGDDNNININDNVVNDNVGVSVEFEDDEEGYDYDGYERSDLDVMQED
VEEETTSWSNGQRKVIDLESEVLFRKGGVLITNDKCELPLGSCRVHNKGYEEVHVPALKG
KAVGVDEKVVKVSSMPSWAQMAFKGMSELNRVQSKVYETALFKADNVLVCAPTGAGKTNV
AMLAILQQIGLHMNADGSFNHSDYKIVYVAPMKALVTEVVGNLSERLKPYGVTVMELSGD
QSLTSRQIEETQIIVTTPEKWDIVTRKSGDRTYTQLVKLIIIDEVHLLHDNRGPVLEAIV
ARTVRQIETTKEHIRLVGLSATLPNYDDVALFLRVDLKKGLFYFDNSYRPCPLAQQYIGI
TVKKPLQRFQLMNDICYEKVIGVAGKHQVLIFVHSRKDTVKTACAIKDTALANDKLGIFL
KDRASREILHEHTDLVKSNDLKGLLPYGFAIHNAGMTRADRQLVEDLFASGHIQVLVSTA
TLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDVMQMLGRAGRPQYDTCGEGIVITGH
SELLYYLSLMNQQLPIESQFVSKLADQLNAEIVMGTVRNAKEAINWLSYTYLYIRMMRNP
ALYGLSSDALQTDQLLEARRADLVHSAATILERNNLVKYDRKSGYFQETNMGRIASYYYI
THGTITTYIENLKPTMSEIDLCRLFSLSEEFKHVTVRRDEKMELVKLADRVPIPIKESFE
EPSAKINVLLQAYISQLHIEGHSLTSDMVFITQSAGRLMRALFEIVLNRGWAELTEKALN
LCKMINKRIWGVQTPLRQFDGLKNDILIKLEKKDLAWERYYDLSSHELGELVRGPHLGRV
LHKYIHQVPKLNLAAHIQPVTQSMLTVELTITPDFQWDDKIHGYVEPFWVIVEDNDGENI
LHHQYFLLKKQYIDKDRALKLVLPLYEPLPPQYYIKVVSDRWIGSLSVLPVSFRHLILPE
KYPPPTKLLELQPLPVTALRNPLYESLYQEFEHFNPVQTQVFDVLYNTDDNVLVASSAGW
GKTICAEFSVLRHHQKGPGDVMRAVYIAPVEALAKERYNEWEKKFGDGLGLTVCVLTGET
TTDLKLLENGQVIISTPDKWDALSRRWKQRKHVQQVSLFIVDDLHLVGGQNGHVLEIIVS
RMRYIASLGHNTRIIALSTSLANANDLGEWMGATSRGIFNFPPSVRPVPLKTHIQNLPLY
KHASFDTLMQSLSKPTYNAIIQHTKNKEPAIVFVPTRKHTRLTAVDLMTYSIAESNIQSE
NKVGPFIDRIQEPTLKETLKHGVGYLHEGLTTIDQDIVKTLFETGCIRVCVVSTAMCWAV
SLRAHLVVVMGTQYYDNTDYSFTDLLRMMGRTGRPLDDSDGKCVIFCGGLCRAYCIKFFV
TGFPVESHLQHHLHDTLNAEVVTEAIVNKQEAVDYLTWTFMYRRLTQNPNYYNLQGVSHR
HLSDHFSELVEKTLTDLESSKCVLIQDDFNISPDNLGMIASYYYISYTTIERFSSSITSN
TKLKGILEILATASEYETLAVRPGEEVLIRRLINHQRFSFENPNYTDPHVKASALLQAHF
SRQLVGGSLGFDQKEVVLTAGKLVQALVDVVSSNGSLSLALLAMEVSQMLTQGMWERDSV
LLQLPHFTKELAERCEANPGRSVKTVFDLVEMEDNERQLLQMSDLKLMDIAKFCNRYPNI
DMSYEVVNSESIRATDDFSLMVTLERDGTEVGPVDGPRYPKSKEEGWWLVVGDTESNAVL
AIKRVNLQSKLRVRVDNISAPSEVGKKMLSLYLMCDSYMGCDQEYSFTVDVKPY
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgcttttggtttccgagcggataaccgattatacggatgctggtgatgataataatatt
aatattaatgataatgtggttaatgataatgttggtgtatctgttgagtttgaggatgat
gaagagggttatgattatgatggttatgaaaggagtgatcttgatgttatgcaagaagat
gttgaggaggagacgacgagttggtcaaacggtcaacggaaggtgattgatctcgagagt
gaggttttgtttcggaaaggtggtgttttgattacgaatgataagtgtgagcttccgttg
gggtcgtgtagggttcataataaagggtatgaagaggttcatgtgcctgcgttgaaaggg
aaagcggttggcgtggatgaaaaggttgtgaaggtttcgagcatgccgagttgggcgcag
atggcgttcaaggggatgagtgagttgaaccgggttcagagtaaggtttacgagactgcg
ttgtttaaagcggataatgttttggtttgtgcgcctactggagctgggaagacgaatgtt
gctatgcttgcgattcttcaacagattggtttgcatatgaatgcagacgggtcgtttaat
catagtgattataagatagtgtatgtggcgccgatgaaggctttggtgactgaagtggtt
gggaatttgtctgaacgtttgaagccgtatggtgttaccgtgatggagttgagcggggac
cagtcgttaacgagtcgacagattgaggaaacacaaattatagtaactacgccggagaaa
tgggatattgttactaggaagtcaggagaccggacttatactcaactcgtgaagcttata
attatcgatgaagtacatctcttgcatgataacagaggacctgttcttgaagctattgtt
gcgaggaccgttaggcaaattgagacgacaaaggaacatattcggttggttggattatct
gccacgcttccgaactatgatgacgtggcattgtttctgcgagttgatttaaagaaaggt
ttattttattttgataatagttatagaccgtgcccgcttgctcagcagtatataggaatc
acagtgaagaagccattgcagaggtttcagttgatgaatgatatttgttatgagaaggtc
atcggtgtggcgggaaagcatcaggtgcttatatttgtgcattcaaggaaagacacggta
aagactgcatgtgcaattaaagacacggctcttgctaatgacaaattagggatcttttta
aaagaccgtgcaagccgcgagattcttcatgaacatacggatcttgtgaaaagcaatgat
cttaagggtcttttgccttatggttttgcaattcataatgctggaatgactcgggctgac
cgtcaattagttgaagatttatttgcttctggacacattcaagtactggtttcaactgcc
actctggcatggggtgtgaacttgccagctcatactgtgattatcaaaggaacacaggtt
tataatccagaaaaaggagcatggactgaacttagtccactcgatgttatgcagatgttg
ggtcgtgcagggagaccgcagtatgatacttgtggtgaagggattgttataactggacat
agtgagctgttgtattatctttctttaatgaatcaacagcttccaattgaaagtcagttt
gtttccaagttggctgatcaactgaatgcagaaattgttatgggaactgttagaaatgca
aaagaagccatcaattggcttagttacacttacctgtacattcgtatgatgcggaaccct
gcactttatggtttatcttccgatgctttgcagacagatcaattactcgaggctaggaga
gctgatctggtacattctgctgcgactatacttgaaagaaacaacttggtgaagtatgat
agaaaaagtggttattttcaggagaccaatatgggtagaattgcaagttactattacata
actcatggaacgattaccacttacattgagaatttgaagcctactatgagtgaaatagat
ctttgcaggctgttttcactcagtgaggagttcaaacatgtgacagtaagacgggatgaa
aaaatggaacttgtaaagcttgcggatcgtgttcctattcccatcaaggaaagctttgaa
gaaccgagtgcaaagatcaatgtcttacttcaagcgtatatttctcagctacacattgaa
ggacactctttgacttctgacatggtcttcattactcagagtgcgggacgtctgatgcgt
gctctttttgagattgtgttaaacagaggctgggccgagttaaccgagaaagctttaaac
ttgtgcaaaatgataaataagaggatttggggtgtacaaactccactacgccaatttgat
ggtttaaaaaatgatatattaataaaactggagaaaaaagatttagcatgggaaagatat
tatgacctgtcatcacacgagctaggagagctcgttcgtggcccgcatttgggaagagtg
cttcataaatacattcaccaggtcccgaagcttaaccttgcagcacatattcaaccagtc
acccaaagcatgttaacagttgaactcactatcactccagattttcagtgggatgacaag
atccatggctatgttgaaccgttttgggtgattgtagaagataatgatggggaaaacatt
cttcatcaccagtatttcttgctgaaaaaacagtatatcgataaagaccgcgctttaaag
ctcgttctaccgttatacgaaccattgccacctcagtactatattaaggttgtttctgac
agatggatcgggtcgttatcggttttacccgtttcgtttcgtcacttaatcttacctgaa
aagtacccaccaccaaccaaattactagagttgcagccactccctgtaaccgctttgaga
aacccgttgtatgaatctctttatcaagaattcgaacactttaaccccgttcaaactcaa
gttttcgatgtgctgtataacactgatgacaatgtgttagttgcttcatcagctggatgg
gggaaaactatatgtgctgagttttcggttttaagacaccatcagaaagggcctggtgat
gtcatgcgggccgtgtatattgcacccgttgaagcacttgctaaggaaagatataacgag
tgggaaaagaaatttggagacgggctcgggttgaccgtttgtgtgttgaccggggaaaca
acaaccgatttgaagttacttgaaaatgggcaggtgataatcagcactccagataagtgg
gacgcgttatcgcgtcgttggaagcaaagaaaacatgttcaacaagtaagtctttttatt
gttgatgatttgcatttggttggagggcaaaatggtcatgtcttggagattattgtgtcc
aggatgaggtacattgcaagtctgggtcataatacacggatcatcgcgttatcgacttca
cttgcaaacgctaacgatttgggcgaatggatgggtgccacgtcacgcggtattttcaat
ttcccgccatctgttcgacccgttccactcaagactcatattcaaaacctgccattgtac
aaacatgctagttttgataccctaatgcaatcattgagcaaaccgacttacaatgcaatc
atacaacacactaagaataaagagcccgccattgtgtttgttcccacaaggaaacacacc
cgcctgacagctgtcgatctgatgacatactcgattgctgaaagtaatattcaatctgaa
aacaaggtgggcccgtttatcgaccgaatccaggagcccacgttgaaggagactttgaaa
cacggggtcgggtatctacacgagggtttgaccaccattgaccaagatatagttaagaca
ctgtttgaaacgggctgcattcgagtgtgtgtagttagcactgcaatgtgttgggcggtc
tctcttcgtgcacacttggtggttgttatgggaacacaatattatgataacaccgattac
tcattcaccgatcttcttcgaatgatgggtcgcacgggccgaccacttgacgatagtgat
gggaaatgtgttatcttttgtggcggcctgtgtagagcatactgcataaagttcttcgtt
acagggtttccagttgaaagccatttgcagcatcacttacatgatactctcaatgctgag
gtagttactgaggcgattgtaaacaaacaagaagccgttgattatctgacatggacgttt
atgtaccgtagactaacccaaaaccctaactattacaacctgcaaggtgtaagtcacagg
catttatcggatcatttttccgaactagtggagaagacgttaactgatttggaatcgagc
aaatgtgttttgatccaggatgattttaacatttcacctgataatcttggtatgattgct
tcatattattacatcagttacacgacaatcgaacggtttagttcttcgattaccagtaac
acaaaactgaagggtattttggagattttagctacagcatccgaatatgagacacttgca
gttcgacctggtgaagaggttttaatccggaggttaatcaaccatcaacgattttcgttt
gaaaacccgaactacacggacccgcatgtcaaggctagcgcgctgctacaagctcatttt
tcaagacagttggtaggtgggagtctcgggtttgaccagaaagaagtggtcttaactgct
ggtaagttggttcaagctctggttgacgttgtttcgagtaacgggtcgcttagtttagct
cttcttgcaatggaagttagccaaatgctgacacaaggaatgtgggaacgagactcggtt
ctgttacaactgcctcatttcactaaagagttagccgaacgatgtgaagcaaacccgggg
agaagtgtgaagacggtttttgatttagtcgaaatggaagataacgaaagacagttgtta
caaatgtcggatcttaagttaatggatatcgcaaagttttgcaaccgttatcccaacatt
gacatgtcatatgaagtggtgaatagtgaaagtattcgggccacggatgattttagtttg
atggtgacacttgaacgggatgggaccgaagtggggcccgtggatgggccgaggtacccg
aagagtaaagaagaggggtggtggcttgttgtcggggatactgaaagtaacgcggtgctt
gcgattaagagggttaacttgcagagcaagttaagggtgagagttgataatattagtgct
ccaagtgaagttgggaagaaaatgttgagcttgtatttgatgtgtgattcttacatgggg
tgtgaccaagagtatagcttcactgttgatgttaaaccatattag
DBGET
integrated database retrieval system
