Bidens hawaiensis: 143627336
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Entry
143627336 CDS
T11418
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03013
Nucleocytoplasmic transport
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143627336
03015 mRNA surveillance pathway
143627336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143627336
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143627336
5.6.2.5 RNA 5'-3' helicase
143627336
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
143627336
mRNA cycle factors
Common to processing body (P body) and stress granule
143627336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
nSTAND3
UvrD-helicase
NPHP3_N
SRP54
ATPase
AAA_16
PhoH
AAA_22
AAA_25
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
143627336
NCBI-ProteinID:
XP_076953303
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MDSQPSNLYDTASQPDTGHDDAYTFLEFNTQDDDDDFNYPEFHELSQPNAVRSSPSSSVW
PTPLDSISVDNTNAVVDHHSDTNASPVSAKAVRPNNNNNNQASAVDALAAGMSGLNFEET
GDDDGYEYSKGDFMEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFILGFISAKTESVVVLLCREPCLNLNSLKDMN
WDLSQWCPLIDDRCFLQWLVKVPSETEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRVA
YFVFPKEDNELRLVPGDELILRYSGDPAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
LNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEMQMVRNALPRRFG
APGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQST
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPSLSEFPSNNFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKDIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKMYNDRRFFFGGGPGIVPNDTFGST
NPGADRRNSRSRGSYMPPGPSNGAHKPGLHPAGYPMPRVPIPSYHGGPQPYAIPTRGAIH
GPFGGVPHVPPPGNRGFGGGRGNAGHIPHQQGSQQPIGAGMGSSFNFPMENPNSQPSPGG
PLSQPGYVSNMTQGPSQAFRDGFSVGGMSQDFLGDDFKSQGSHVPYNIADLSTQASQGGY
GVDYVTPATQAGFPGSFLNQNSQAGFSRYGAGNDFMSQDYMGHGLQGLFTQVGFKDPSQD
DSSQAHFSADPTSSLQTQGVMNPLYSQPFTHYNSQPMNMPAQQQQQQQQQTQQGHGSHYK
G
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaaccaagcaatctctacgacacggcgtctcaaccggacaccggccacgac
gacgcctacacatttctcgaattcaacactcaagacgacgatgacgatttcaattacccg
gagtttcacgagctctcgcaacctaacgccgttagatcctcaccgtcatcctccgtatgg
cctacgcccttagactccatctccgtcgacaacactaacgccgtcgtcgatcatcattcc
gataccaacgcctctcctgtttccgccaaagccgttagaccaaataataataataataat
caggcgtcggcggttgatgccctagctgcggggatgagtgggttgaatttcgaggagacg
ggagacgatgacggttacgagtattccaagggggattttatggagcacgcgtgtcggtac
tgcggcgtgcagaatcccgcgtgtgtggtgaggtgtaatgtgccgtcgtgcaggaagtgg
ttttgtaattcgagagggaatacttcgggttctcacattgttaatcatttggttcgagct
aaacacaaagaagtgtgtcttcataaagacagtccattgggagagacgattctcgagtgt
tacaattgtggatgtcgaaatgttttcattttgggatttatttcagccaagacagagagt
gtagttgtgcttctttgtagggaaccgtgccttaatctgaattccttgaaagacatgaat
tgggatttaagtcaatggtgtccacttattgatgacaggtgtttcttgcagtggcttgtt
aaggttccatctgaaacagagcagctgcgggcccgccagatcagtgctcagcaaatcaac
aaggttgaagaactgtggaagacaaaccctgatgcaactttggaagatcttgagaagccc
ggtgtagatgatgagcctcagcctgtagccataaagtatgaagatgcttatcagtatcaa
aatgtttttgccccgcttatcaagcttgaagccgattatgataaaatgatgaaagagtcc
caaagtaaagacaatctcacgattcggtgggatattggtctcaacaagaaacgtgttgcg
tattttgttttcccaaaggaagacaatgagttacgtcttgtacctggtgatgaattgata
cttcgatactctggggaccccgcacatccagcctggcaatcagttggacatgtgattaag
ctaacggcacaagaggaagtagcactcgagcttcgtgcaagtcagggcgttcctgttgac
ttgaatcatggttttagcgttgactttgtgtggaaaagcacaagttttgaccggatgcag
ggggctatgaaaaattttgctgttgatgagacaagtgtcagtggatatatataccatcat
ctgttaggccatgaggttgagatgcaaatggttcgcaatgcattgcctcgtcgttttggt
gcacctggtcttccagagctcaatgcatcacaagtttttgctgtaaaaagtgttcttcag
aggccaataagtttgattcaagggccacctggtactggtaaaacagttacttctgcagca
cttgtttatcatatggctaaacaaggtcaaggacaggttttggtatgtgctccgagcaat
gtcgctgtagaccaacttgcagagaagataagtgccactggcttaaaggttgtaaggctg
tgtgcaaaatcaagggaagccgtaagttcacctgttgagcacttgacacttcattatcag
gttcgacatcttgatacatctgaaaagagtgaacttcacaagctgcaacagttgaaagat
gaacaaggggagttatcaagcagtgatgaaaagaaatataaagcactaaaacgggctaca
gaacgggagatttctcaaagtgctgatgtcatctgctgcacatgtgttggagctggagat
cctcggttggcaaattttagatttcgtcaggtgctaattgacgaatccactcaatcaact
gagcctgagtgccttattccccttgttcttggagcaaaacaggttgttcttgttggcgac
cattgtcaacttggtccggtcattatgtgcaagaaagcagcacgagctgggttagctcag
tctttatttgagcgacttgtgctacttggtgtaaaacctattagattacaagtacaatat
cgtatgcatccgtcactctcagaattcccgtctaataacttctatgaagggacactccaa
aatggagtgacaataaacgaaaggcagtcaaccggcattgacttcccctggcccgtgcca
aaccgtcccatgttcttttatgttcagatgggacaagaagaaattagtgctagcgggaca
tcatatcttaacaggactgaggctgcaaatgttgaaaaaatagtgaccacttttttaaga
agtggtgtagttccgagtcagattggggttataacaccatatgaaggccaacgtgcatac
attgttaactacatgtcaagaaatggtgcacttagacagcaactttacaaggacattgag
gttgcgagtgtggattcgttccaagggagggaaaaggattacattattttgtcatgtgtg
agaagtaatgaacatcagggtattggatttttaaatgatccacgtaggcttaatgttgca
cttactcgtgctcgttatggtattgttattcttggtaaccctaaagttcttagcaaacaa
ccgttgtggaatgggttactcacacactataaggagcatgaatgtttagtggaaggacct
ttgaacaacttgaagcagagtatggttcaatttcagaagccaaaaaagatgtacaatgac
cgaaggtttttctttggtggcgggcccggtattgtacctaacgacacctttggatcaaca
aaccctggtgctgatagaagaaacagtcgttctagaggttcgtacatgccacctggccca
tctaatggggctcataaacctggcctgcatcccgctggatatccaatgccacgtgtgcct
attccatcttatcatggtggtccacagccttatgctattccaactcgtggtgcaatacat
ggtccctttggtggtgttcctcatgttccaccgccaggaaaccgtggttttggtggcgga
agggggaatgcgggtcatattcctcaccaacaaggctcacagcaaccgataggtgcagga
atggggtctagttttaactttcctatggaaaatccaaatagccagccgtcacctggtggt
ccattatctcagcctggttatgtttctaatatgactcaaggcccgagtcaggcttttcgc
gatgggttttctgttggtggcatgtcacaggatttcttgggtgatgattttaaaagccaa
ggatcacatgttccatataacattgctgatctttccacacaggcttctcaaggcggttat
ggtgtggactatgttactccggccacccaagccgggtttcctggtagcttcctgaatcag
aattcccaagctggattttctcgttatggtgctggaaatgatttcatgtctcaggactac
atgggccatggtttacaaggcttgtttacacaagttggatttaaagatccatcacaagat
gattcgtcacaggcccacttcagtgctgaccccacctcttcccttcagacacagggtgtg
atgaatcctctatactcccagccatttacgcattacaactcccaaccgatgaacatgcca
gctcagcaacagcagcagcagcagcaacaaacacaacagggacatgggtcccactacaag
ggttaa
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integrated database retrieval system
