Bidens hawaiensis: 143634533
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Entry
143634533 CDS
T11418
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143634533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143634533
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143634533
Spliceosome [BR:
bhw03041
]
Complex C
Other components
Step II factors
143634533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_30
nSTAND_NTPase5
SLFN-g3_helicase
T2SSE
ATPase
ABC_tran
AAA_29
Motif
Other DBs
NCBI-GeneID:
143634533
NCBI-ProteinID:
XP_076958697
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MPSMATGDRRNFNSYNSNNHRQFKPQYVNEEHKSESFARRQKIEQQRRSLPIASVEKRLI
EEVRKNDTLIIVGETGSGKTTQLPQYLCNGGFCQNGGMIGITQPRRVAAITVAKRVAEEC
GAELGQKVGYSIRFEDMTSASTKIKYMTDGLLLREALLDPKLSKYSVIIVDEAHERTVQT
DMLLGLLKDVQKKRSQNSNEESNKVKKLSPLKLIIMSASLDARGFSEYFGGAKAVHVMGR
QFPVDILYTALPETDCQDAALVTIFQIHLEEGPGDILVFLTGQEEIEGLEGLVRENLKKL
PEANQKLLIFQLFSSLPSEKQMKVFAPAPAGFRKVILATNIAETSVTIPGVKYVIDPGLV
KARGYSPDSGIESLIVVKTSKAQALQRSGRAGREGPGKCFRLYPESQFERLDDSTVPEIK
RCNLSNVILQLIALGVDDIIGFDFMEKPDRMAVIKSLELLYLLGALTDEKKLSDPIGLQM
ARLPLEPNDSKALILASQFDCLEEMLIVVSMLSVESIFYIPRDKLEESRTVKKSFSSPEG
DHLTLLNVYHASVEVLEKNKMENGDEKAEKNLRKWCKDNFINSRSLKQARNVYNQIRENV
ERMGLKILSCGDDMLPLRRCLAASYFLNAALKQPDGTYRVLANGQIAQIDPNSILWRAKP
ECIIFYNLVQTSRIYLRNVTRIDYLWLAELAPQCYALKDD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgatggccacaggagacagaagaaacttcaattcatacaacagcaacaatcat
cgtcaattcaaacctcaatatgtcaatgaagaacacaagtctgaatcctttgccaggaga
cagaagattgagcaacaaagaagatctttacccattgcttcagttgagaaaaggcttata
gaagaggtcaggaaaaatgataccttgataattgttggtgaaaccggaagtgggaagaca
acgcaattaccccagtatttatgtaacggaggattttgtcaaaacggaggaatgattgga
atcactcagccaagacgtgttgctgcaataactgttgcaaagcgtgtagctgaagaatgc
ggtgctgaattgggtcaaaaggttggttactctattaggtttgaggatatgacctctgct
tctaccaagattaagtacatgacagatggactgctattaagggaagcgcttttggaccct
aagctctcaaaatactcggttataatcgttgatgaagctcatgaaaggacagttcaaacc
gatatgttgttaggcttgcttaaagacgtacaaaagaaaagatctcaaaattctaatgaa
gaatctaataaagtcaaaaagttaagtccgttaaagttaattattatgtctgctagtttg
gatgctcgcgggttttccgagtattttggtggtgcaaaagcggttcatgtgatggggagg
caatttcctgtggatattctgtacactgctctacccgagacagattgccaggatgcagct
ttagttactatatttcagatacatttggaagaagggccgggcgatatactcgtgtttcta
accggtcaagaagagattgaaggtcttgagggtctcgtgcgtgaaaatcttaagaaatta
cccgaagccaatcagaaacttcttatatttcaattattttcttctcttccatcagagaaa
caaatgaaagtttttgcacctgctccagctggattcagaaaggttatactggcaacaaac
atagctgaaacatcggtcacaatacctggagtcaagtatgttattgaccctggattggtg
aaagcgcgcggttactctcctgacagtgggattgaatctttgattgttgttaagacttca
aaagctcaagctcttcaaagaagtggacgtgcaggtcgtgaaggacccggaaagtgcttc
cgtctttatcccgaaagccaatttgaaaggcttgatgactccacagtgccagaaatcaaa
agatgcaacctttcaaatgttattttgcaacttattgctcttggtgttgatgatataatc
ggatttgacttcatggaaaaacctgataggatggctgtgatcaaatcactggaattatta
tacttgttaggagcattaaccgatgaaaagaaattatcagatccaattggacttcaaatg
gctcgtcttccattagaaccaaacgattcaaaggctttaattttagccagccagtttgat
tgtttggaagaaatgttaatcgtagtgtcaatgctttcggtggaatccattttttatatt
cctcgtgacaaattagaagagtcacggacggttaaaaaatctttctcgagtcccgaggga
gatcatttgactttactaaatgtgtaccatgcttcagttgaggttttggagaagaataaa
atggaaaatggtgacgaaaaggccgaaaagaatttgagaaagtggtgcaaggataacttt
attaatagccgttcgttaaagcaagctcgtaacgtttacaatcaaattcgggaaaatgta
gaacggatgggacttaagatattgtcgtgtggagatgacatgcttccgctgcgtcgatgt
cttgctgcttcatattttttgaatgcggccttgaagcagcctgatgggacatacagggtt
ttggcaaatggtcagattgcacagattgacccgaattctattttatggcgtgcaaaacct
gagtgcataattttctacaatttagtccaaacatcgcgtatttatttgcgcaatgttact
agaattgattatttgtggctagctgagctggcacctcagtgttatgccttgaaggatgac
tag
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