Bidens hawaiensis: 143634696
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Entry
143634696 CDS
T11418
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143634696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143634696
Enzymes [BR:
bhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143634696
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143634696
mRNA degradation factors
3'-5' decay
Ski complex
143634696
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
143634696
NCBI-ProteinID:
XP_076958833
LinkDB
All DBs
Position
Unknown
AA seq
1342 aa
AA seq
DB search
MDRIDTVTELPFRIGFTGHTGHLRIEPLPSVQQSTPVNSLPDFILPPAFAKETPESITKF
VEEKYLLPRLDEDEFCAEKSGRQWEFDWFDQAKVDLEPTMPRTVVVPAWELPFRRSSDAK
KWEPASVQVDVSELMVEADNSIGVRISGPPKDFVKGSINNRPFRPGGLDDSQSAGRTFPD
GASNGEWVQELLVGGPAQVVPPIFKQGMKLGDLKGHSCSWIFCEDQSLPNSKATPESTLS
VQFDDLFKRAWEDDVTEVPIDGDTSDLQINVIEAGSPRSITSTEAENKPEVSNDSESSVI
DQILSTTGSGGLTKDLDESGDSGQEKSKDAKVWAVTGGSDGIADHFDELVPDMALDFPFE
LDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKY
RDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDV
ERGVVWEEVIIMLPRHINFVLLSATVPNTVEFADWIGRTKQKQIRVTGTTKRPVPLEHCL
FYSGEVYKICEQEKFISQGLRAAKDAHKRKTMTTGVSGYGPLAPAHTQKPNTGFVRGKPN
SSKQTGPQNFVGTGRAHQGNNNWGSRVSEKSVWLSLINKLSKMSLLPVVIFCFSKNRCDK
SADNLRETDLTSRSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQGLLHRGIGVHHAGLLP
IVKEVVEMLFCRGVIKILFSTETFAMGVNAPARTVVFDSVRKFDGKEFRQLLAGEYTQMA
GRAGRRGLDKIGSVLVMCRDEIPDESDLKSLITGSATRLESQFRLTYIMIMHLLRVEELK
VEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPIKSIDCIKGEPAIEEYYEWYLEAEMYSN
QITEAVLQSSVSQPFLSPGRLVIVKSQSGQDHLLGVILKSPSSANKQYIVMVLTPSLPST
LQGSDDQQKKSNAGLQILMPKSKRGMDDDYYYSSSTARKVSGVVKIKLAHCGTAAGANYE
VRETDTKEFLSICNAKIKIDQVGLLEDDSTAAYSKTVDSLLNQKVDGNKYPPALDPVKDL
KLKDVSLVEAYYKWNNLLQKMSQSKCHNCIKLEEHIKFAREIKKYRDEVNTLKFQMSDEA
LQQMPDFQGRIDVLKELRCIDSDLVVEIKGRVACEMNSGEELICTECLFDNQFDDLEPEE
AVALMSAFVFQQRNASEPSLTPRLAKARDRLYDTAIKLGNIQAKFKIQIEPEEYARENLK
FGLVEVVYEWAKGTPFADICDLTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKM
EVASNAIKRDIVFAASLYITGL
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaattgacaccgtgacagaattaccgttccgaatcggattcaccggtcacacc
ggtcatcttcgaatcgagccattaccttctgttcaacaatccacacctgttaactcgcta
ccggacttcatactccctcctgcatttgctaaggagacaccggaatcgatcacgaagttt
gttgaagaaaagtatcttcttccaagactggatgaagatgaattttgtgctgaaaagagt
ggaaggcaatgggagtttgactggtttgaccaagcaaaagttgacctagagccgacaatg
ccacgcacagttgtggtgcctgcgtgggagttaccttttagacgttcgtcggatgctaag
aaatgggaacctgcatccgtgcaggttgatgtgtctgaactaatggtagaagcagataat
tcaattggtgtgcggattagcggacctccaaaggattttgtgaagggaagcattaacaac
cgcccgtttcgtcctggtggtttggatgattctcaatccgcaggaaggacgtttcctgat
ggtgcttcaaatggtgaatgggtacaagaactccttgttggtggtcccgctcaagtcgtc
cctcctatctttaaacaaggaatgaagctcggagacctcaagggtcattcgtgttcctgg
atcttttgtgaagatcaaagcttgcctaactccaaggcaacacccgagagtactttatct
gttcagtttgatgatttatttaaaagagcttgggaagatgatgttacagaagtaccgatc
gatggagatacatccgatctacaaattaatgtaatcgaggcgggttccccaagatccatt
acatctacagaagctgaaaacaagccagaagtttcaaatgactctgaatcatctgttata
gatcagattctgtcaacaactggatctggaggattgactaaagatttggatgagtcgggt
gacagtggtcaagaaaagtcaaaggatgcaaaagtctgggctgttactgggggtagtgat
ggcattgcagatcattttgatgaacttgttcctgacatggcattagatttcccttttgaa
ctagatgcattccaaaaagaggctatatattatcttgagaaaggggaatcagtgtttgtg
gcagctcatacatcagcaggaaagacagttgttgcagagtacgcatttgcactagcatct
aaacattgcacacgagctgtttatactgctcccataaaaacaatcagcaaccaaaagtac
agggacttctctggaaaatttgatgttgggcttctcacaggggatgttagcttgaggcct
gaggcttcatgcctcatcatgacaactgagattttaagatcaatgctttatagaggtgct
gacatcatacgtgatattgaatgggttatatttgatgaagtacattatgtaaatgatgtt
gaaagaggggttgtttgggaagaggttatcataatgctcccaaggcatatcaatttcgtt
ctcctctctgccacggtacctaatacagttgagtttgccgattggattggtagaacaaaa
caaaagcaaatccgtgtaactgggacgacaaaaaggcccgttccattagagcactgtctt
ttttattctggagaagtgtacaaaatctgtgaacaggagaaattcatatcacagggatta
agagctgctaaagatgcccataagcgaaaaactatgactacaggtgtcagtggctacgga
ccacttgctccagctcatactcaaaaacccaacactggtttcgtgaggggcaaaccaaac
tcaagcaaacaaaccgggccccaaaactttgttggtacaggtcgggcccaccaaggaaat
aacaattggggctcgagagtttctgaaaaatctgtgtggctgtctctgattaataagttg
tcaaagatgtcccttttacctgtggtgatattttgtttctcaaagaatcgttgtgacaaa
tcagctgataatctgcgtgaaaccgacctcacgagtcgatctgaaaaaagcgagattcgt
gttttctgcgacaaggcgttttctcgtctaaagggatctgataggaatcttccgcagatt
gtgagagtccaaggccttcttcatagagggattggtgtacatcatgctggtttactccca
atagtcaaagaagtagttgaaatgcttttctgtcgtggtgttattaagattttattttca
accgagacatttgcaatgggagttaacgcaccagctagaacagttgtatttgatagtgta
aggaaatttgatggaaaagaatttagacagttattagcaggagaatacacacagatggcg
gggcgtgctggtaggagaggacttgataagattgggagtgttcttgtgatgtgtcgggat
gagattccagatgaatctgatttgaagagtcttataaccggaagtgcaaccaggcttgaa
tctcagtttcgtttaacctatatcatgattatgcatctacttcgtgttgaagaattaaag
gtggaggacatgctgaaaagaagttttgctgaatttcatgctcagaaaaaactaccagag
caacagcaattgctgatgcgaaagcttgctcagcctataaaatctattgactgcataaaa
ggtgagccggcaatagaggaatactacgagtggtacttggaggctgagatgtatagcaac
caaataactgaggcggtcttgcagtcttcagtttctcagccttttctttcgccaggaaga
cttgtcattgtcaaatcccaatctggccaggaccacttacttggggtgatcttaaaatcg
ccctcttctgctaacaaacagtatatcgttatggtgcttacaccatctttaccatcaaca
ttacaaggcagtgatgaccaacaaaagaaatcaaatgctggtcttcaaatattaatgcca
aaatcgaaacgcggtatggatgatgattattattactcttcttccactgcacggaaggtg
tcaggtgttgttaaaattaaactggcccattgtggcacagctgctggtgctaattatgaa
gtcagagaaaccgacactaaagaattcttgtctatttgcaatgccaaaatcaagattgat
caagttggccttctagaagatgacagcactgcagcttattctaaaaccgttgatagtttg
ttaaatcaaaaagttgatggaaataagtaccctccagcccttgatccagttaaagatttg
aagctgaaagatgtgagtttagtggaagcatactacaaatggaacaatttattacaaaaa
atgtcacaaagcaagtgccataattgtattaagttggaagaacacatcaaatttgctagg
gagataaagaagtatagagatgaagttaacacactcaaatttcaaatgtcggatgaagca
cttcaacagatgcctgattttcagggtcgtattgatgtgttgaaggagctcaggtgtata
gatagtgatcttgtggttgagattaaagggagagttgcttgtgagatgaattcaggtgaa
gagttgatatgtacagaatgcttatttgataatcagtttgatgatttggaaccagaagaa
gccgtggctttgatgtcggcttttgtgtttcagcagaggaatgcttctgagccttcactt
actcccagacttgcaaaagccagagataggttgtatgacactgccatcaaacttgggaat
attcaagcaaaattcaaaatacaaatcgagcccgaggagtatgcacgagagaatctcaag
tttggacttgttgaggtcgtttatgagtgggcaaagggaactccgtttgccgatatatgt
gatctcacggatgtccctgaagggcttattgtaaggacaatcgtacggttggatgaaaca
tgtcgtgagttcagaaacgctgcagcaatcatgggcaactcggcgttgtacaagaaaatg
gaagttgcttcaaatgcaatcaaacgtgatattgtttttgcagctagcttgtacattact
ggcttgtaa
DBGET
integrated database retrieval system
