Bidens hawaiensis: 143635484
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Entry
143635484 CDS
T11418
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bhw Bidens hawaiensis
Pathway
bhw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143635484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhw03021
]
143635484
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143635484
Transcription machinery [BR:
bhw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143635484
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
143635484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
143635484
NCBI-ProteinID:
XP_076959424
LinkDB
All DBs
Position
Unknown
AA seq
826 aa
AA seq
DB search
MDDPLANTTNPKSSTPILDRFKVLLKDREDEARVSIGPNDDVLSTGEIVELYEAVLSELV
INSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVR
HFSARLPEVFCAAYRQVHPNQRPSMRHLFGTWSSVFPASVLRKIESQLQFSPSSSLRDSE
SPRPAHGIHVNPKYLEKIQHARAVSAPKILDEYESDSRNVVSSHIGAQSMGSTSHVGHTP
FSLGHKRPPSPALDDYPMVDSPKRVVEGASPSRHGYDYRTGVMTAGDEDLRDWRRPHGVS
NGFDVQRPRALISAYGTDERIKTTSQKLNHGKNLTVNGLGLGSKPGVMTWRNSDEEEFEW
EMSPTLADRGRGNDLFSSVSLPGSSKVGQPLHVDRSMPPKTDFGRGDWSNHELLPSVTPN
TAVSLADRGLKRKMPGYQSELQDSLNLSHGQHHYNSHGQRPHLIDSFPGSSNLPHHLSSS
SWRAPLNLQMPSHPYQKQVNDTFSERRESSQQIPVQNTRFPPQLSLPQEIRPNMIPPTLG
YNPSHLVTRPMIRGYTPQRFDPSVGASLHPVSGMQSSMPFHLGPPPLPPGPPPVPQLLQS
VASAPPAGGAISGLLGSLMAQGFLSLNKPSHEQDSVGLEFDLDVLKTRHESAIKALYEAL
PRQCKTCGLRFKLQEEHSNHMDWHVTKNRVSKNRKQKPSQKWFANVNVWLSSAEALGTDP
VPGFNLPSENVVEKKDDDDMAVPADEDQNVCALCGEPFDDFYSDETEEWMYRGAVYMNAP
YGATVGMDRSQLGPIVHAKCRSESTVDPPDDSANNGRAFTEERMRS
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggacgacccgttggctaacaccaccaatccgaagtcatcaactccgattctggaccga
ttcaaggttctattgaaggaccgagaggacgaagctagggtttcaattgggccaaatgac
gatgtgcttagtaccggagaaattgtggagctttatgaagctgtgttgtcggaattggtt
attaattcgaagccgattattactgatctcacgattattgctggtgaacagagggagcat
ggtgaaggtattgctgatgcgatttgtgctcggattattgaggttcctgttgaacaaaag
cttccttctttgtatcttctggatagtattgttaaaaatattggtagggaatacgtaagg
cacttttctgctcgtttgcctgaggtcttttgtgcggcatacaggcaggtccacccaaat
caacgcccttccatgcgtcatctttttggtacttggtcaagcgtgtttccagcttctgtt
cttcgcaagattgaaagtcaactgcagttttccccttcttcttctttaagagattctgaa
tctccaagacctgctcatggtatacatgtcaatcctaaatatttggagaaaattcagcac
gcaagagcagtttcagctccaaagattcttgatgagtatgaatctgatagcaggaatgtg
gtctcttcacatattggagctcagtcaatggggtcaactagtcatgtgggccatacgcct
tttagtctcggacataaacgccccccatcaccagcacttgatgattatcctatggttgat
tctcccaaaagggttgttgaaggagcatccccatctcgtcacggatatgattatcgaaca
ggcgtcatgacagctggcgatgaagatctacgtgactggcggagaccacatggtgtaagt
aatggatttgatgttcagagacctagagcgctgattagtgcatacgggacagatgaaagg
attaaaacaacgagccaaaaacttaaccatgggaaaaacttaactgtaaatgggttaggg
ttaggtagtaagcctggtgtgatgacatggcggaactctgacgaagaagaatttgagtgg
gaaatgagtcccactttagcagaccgtggtcgtggtaatgatttgttttcatctgtttcg
ttacctggtagctctaaagtaggtcagcctcttcatgtcgaccggtcaatgcctccaaag
actgattttggcagaggtgattggtctaatcatgagctgcttccgtcagttacccccaac
accgcagtttcattggctgatcggggattaaagcggaaaatgcctggatatcaaagcgag
ttacaagattcattaaatctttctcatggtcaacaccactacaattctcatggtcaaagg
ccccatctcattgacagctttccaggtagcagtaatctaccacaccacttatcttcatca
tcttggcgggccccactaaatctgcaaatgccgtctcacccatatcaaaaacaagttaac
gacacttttagtgaaaggagagaatccagtcagcaaatcccggtgcagaacactaggttc
ccaccacagttatcactacctcaagaaattagaccaaatatgataccgcctacattaggt
tataacccgtctcatttagtaacccgacccatgattcgtgggtacacccctcaaagattt
gacccatctgtcggtgcttcattgcatccagtttctggcatgcagtcatctatgcctttt
catttaggcccacctcctttacccccaggcccacctccagttcctcaactccttcaatca
gtcgcctctgcccctccagctggcggtgcaatttctggtttattaggctctcttatggct
caaggttttctctcactcaataaaccgtctcatgaacaggattcggttgggctcgagttt
gatcttgatgttttaaagacacgccacgagtcagcaataaaagctttatacgaagctcta
cccagacaatgcaaaacatgtgggctccggttcaagttgcaagaagagcatagtaatcat
atggactggcacgtgactaagaaccgagtatcaaaaaaccgtaagcagaaaccgtctcag
aagtggtttgctaatgttaatgtgtggctgagtagtgcagaggcgttgggaactgatccg
gttccagggtttaatcttccttctgagaatgttgtggaaaagaaagatgatgatgacatg
gcggttcctgctgacgaggatcagaatgtttgtgcgctttgtggagagccgtttgatgat
ttttacagtgatgaaacagaagagtggatgtatagaggcgctgtgtacatgaatgctcca
tatggagcgactgtaggcatggatagatctcagttaggccccatagttcatgctaaatgc
aggtctgagtctactgtggaccctcctgatgattccgccaataatggacgggcatttacc
gaagagaggatgcgtagttag
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