Bidens hawaiensis: 143636211
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Entry
143636211 CDS
T11418
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bhw Bidens hawaiensis
Pathway
bhw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143636211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bhw03041
]
143636211
Spliceosome [BR:
bhw03041
]
Complex A
U1 snRNP components
U1 related factors
143636211
Complex B
143636211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
143636211
NCBI-ProteinID:
XP_076959980
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MDNNNNISNNPQNPASQSLRPPAIGSIGSQSFGTNYSMQFQAAVTPQQGQPFMQPGSAAR
QYRAVGQTQLPGFSQLLQARPGQPGLPSPSSQPMPMPYMQQQPPQFPSQNAGVPHSSPYT
FNAPSFGQPTNVSSQFHAVSQMHTPVVSSGGQPWMASGNQGPVTVPQTGQQPLTVTPTNQ
ASSVVDASQESSSDWQEYPAADGRRYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFT
TAEGKKYYYNKDTKQSKWTIPEELKLARELAEKEASRGIQSPATLTPSALDQASASASSV
NEVSSSPLAVTSVVPAGHAPSNLGSESTSITVPLIPAAGASTASSPMGKVENSSSHGVPK
ASDGVSVQDTEEAKKGMAVAGKVNTTPVEEKTVDDEQFLYASKQEAKMAFKALLEEANVK
ADWNWEQAMRVIINDKRYGALKAHGERKQAFNEYLMQRKKLEAEERRLKQRKAKEEFTKM
LEESKELTSSMRWSKAMVLFEDDERYKAVDRPSDREDLFQNYLVDLQKKERAKAQEEQRQ
YRSEYRQFLETCGLIKVDTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEKEEDEQ
RKIKKDHIKRVERKNRDEFRKVLDEDVLSGTITAKTQWRDYCQKVKESVAYQAVASNTSG
STPRDLFEDAVEELEKKYHDDKTRVKDSLKLKKVAVLSTWTFEDFKAVIDDDIISSLSDI
NLQLVFEDLVERAKEKEEKEAKKRQSLVKDFTDLLYEIKEITVSSSWDDSLQLFEESSEF
RAIGDETVAREAFDEYIARLVEKAKEKERKREEEKARKEEKERRKEKERKEKEKDREERE
REKDKGKDRSKKDDSDSENLDTITEHKEDKKRDRKHRKRYQDDAGSDKDERDESKRSRRH
GSDRKKSRKHAYSPESDTDSKHKKHKRDSRSKNGAHEELEDGEVGEDGEIQ
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggataataataataatattagtaataatcctcagaatcccgcttcacagtctcttcgg
ccaccagcgattggatccattggctctcaaagttttggaacaaactattcaatgcaattc
caggcggcggttacaccacaacaaggtcaaccattcatgcagccaggttcagccgctcgg
caatatcgtgccgttggtcaaactcagctgccagggttctctcaactgttgcaggcgagg
ccgggtcagcctggcctcccgtctccatcatcacaaccgatgccgatgccgtatatgcag
cagcagccgccacagttcccgagccagaatgctggtgtacctcattcttctccgtatact
ttcaatgcaccgtcattcgggcaaccaacaaatgtgtcttctcagtttcatgctgtctca
cagatgcacacacctgttgtctctagtggcgggcaaccttggatggcttctggaaatcaa
ggtccggtaactgtgccacaaactggacagcagcctttaacagtcactcccacaaatcag
gcgtcaagtgttgttgatgcaagtcaagagtcatcatctgattggcaagaatatcctgct
gctgatggaagaagatattattacaacaagaggaccaaacagtcttcatgggaaaaacct
ttagagttgatgacacctttggagagagctgatgcatctactgtttggaaagagttcaca
actgcagagggcaaaaaatattattacaacaaggatacgaaacaatctaaatggacaata
ccagaggaattaaagctggcacgtgaactggctgagaaagaagcttctagagggattcag
tctccagccactttaacaccttctgcacttgatcaggcttcagcttcagccagctcagtt
aatgaggtgtcatcaagtcctctagcagttacatctgtcgtccctgctggccatgctccc
tctaatttgggctctgagtcaacatctattacagtccctcttattccagcagctggtgct
tctacggcttcgtctccaatgggtaaggtagagaattcatcttctcatggagttccaaag
gcttcagatggtgtttcagtacaggacacagaggaagcgaagaagggcatggcagttgct
ggaaaagtcaacacaacaccggtagaagagaaaactgtggatgatgaacaatttttatat
gctagtaagcaggaggcaaaaatggcatttaaagctttacttgaggaggcaaatgtaaag
gctgattggaactgggagcaggcaatgagagtgatcataaatgacaaaagatacggtgca
ttaaaagcacacggcgaacggaaacaggcgttcaatgagtatttgatgcaaagaaagaag
ttagaggctgaggaaaggcgtttgaagcagagaaaagcaaaagaagagttcacaaagatg
ctggaagagtccaaggaactgacatcatccatgaggtggagcaaagcaatggttctattt
gaagatgatgaacgttataaggctgttgaccgaccttctgaccgtgaagatctttttcaa
aactatctcgttgacctacaaaagaaggagagagcaaaggctcaagaagagcaaagacaa
tacagatcagagtacagacagtttttggaaacttgtggcttgattaaggtggatacacag
tggcggaaagttcaggatcgtttggaagatgatgaaagatgttcacgtcttgaaaaaatc
gaccgcttggagattttccaggagtatatacgtgatttggagaaggaagaagacgaacaa
aggaaaattaaaaaggatcatattaaaagggtggagcgtaaaaaccgtgacgagtttcgt
aaggtgctagatgaagatgttctttccggtacaattacagctaaaactcaatggcgtgac
tattgtcaaaaggtgaaggagtcagtagcttatcaggcagttgcttcaaatacctctggc
tcaactccaagagatttgtttgaggatgcagttgaggagttggagaaaaagtaccatgac
gataaaactagggtgaaagattcactgaaattgaagaaggttgctgttttatcaacatgg
acatttgaagatttcaaggctgttatcgatgatgacatcatctcatctttatcagatatt
aatctgcagcttgtgtttgaagacttagttgagagggcaaaggagaaagaggaaaaggaa
gctaaaaaacgccagtctcttgtgaaagatttcaccgatttactgtatgagatcaaggaa
ataactgtgtcttcttcatgggatgactccctgcaactctttgaggaaagctctgagttc
agagctattggtgacgagaccgttgctcgtgaagcctttgatgaatatattgctcgttta
gtggagaaggcaaaagagaaagaacgcaaacgggaagaagagaaggctagaaaggaggaa
aaagagaggagaaaggagaaagaacgaaaagagaaagagaaagaccgagaggagagagag
agagaaaaagacaaaggtaaagaccgatccaagaaagacgactcagatagtgagaatcta
gatactattacagaacacaaagaggacaaaaaacgagacagaaaacatcgtaagcgctat
caagatgacgcggggtctgacaaggatgaaagagatgaatcgaagcggtctcgccgccat
ggcagcgaccgcaaaaagtcaagaaagcatgcatattcacctgaatctgatactgatagc
aaacataagaaacataagagggattcgcgtagtaaaaatggcgctcacgaggagcttgaa
gatggggaggttggtgaagatggtgagattcaatag
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