KEGG   Bidens hawaiensis: 143637035
Entry
143637035         CDS       T11418                                 
Name
(RefSeq) flowering time control protein FY-like
  KO
K15542  polyadenylation factor subunit 2
Organism
bhw  Bidens hawaiensis
Pathway
bhw03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bhw00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    143637035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bhw03019]
    143637035
Messenger RNA biogenesis [BR:bhw03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     143637035
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st Beta-prop_TEP1_2nd ANAPC4_WD40 DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C ASA1 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR19_1st CFAP251_N Beta-prop_RIG_2nd Beta-prop_WDR41 eIF2A WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_NOL10_N Beta-prop_WDR75_1st Beta-prop_SPT8 NBCH_WD40 WD40_RFWD3 Beta-prop_Vps41 PAC11 Beta-prop_SCAP WD_LRWD1 WD40_like Beta-prop_HPS5 Tricorn_2nd Beta-prop_DCAF12 Beta-prop_WDR11_2nd WDR54
Other DBs
NCBI-GeneID: 143637035
NCBI-ProteinID: XP_076960620
LinkDB
Position
Unknown
AA seq 702 aa
MMYNDPQQQQQQQQQQQPMYHQPPPTPTPPQQMMQHHQQQQQPPPHQFQQQPQMMRQPSA
SSTTLGGGYQDYHQQQQQQPPPPHPAFDGHDNFAAKRMRKIGQRRAVDYTSTVVRHMQTR
LWQQDSRDRTVLQPTPAAAIDMLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT
GRRLITGSHSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSYNDNWMVTGDDGGSIKYWQN
NMNNVKANKSAHKESVRDLSFSRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS
VDWHPTKSLLVSGGKDNLVKLWDARSGRELSSFHGHKNTVLCVKWNQNGNWVLTASKDQI
IKLYDIRAMKELQSFRGHKKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEIQN
AHDSGVWDLAWHPIGYLLCSGSSDNTTKFWCRNRPGDPARDKFSMGNNNQGYNEQNFGLP
GRMPVGFLGPEPPTTPGPFAGLNRNEGTIPGIGVAMPLSLDTSQGDQKPPISSSMPLGAP
PLPPGPHPSLFQQPYQQNPQQHHQQLQPPNMQPLQHPTHMPLLPHSHLPRPPLPMPPHNM
PMLGQMGTMNQMGPPMQQGHFMGMNPMHSGPGGAPPGSIPNMQGPFNLPQGAPMPPMPGL
GPYQPGNPSGGVMGTGQQNFGTPTGIAPPLPPGPPPHGQAPQ
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgatgtacaatgatcctcaacagcaacagcaacagcaacaacagcagcagccaatgtat
caccaaccaccaccaacaccaacaccaccgcagcagatgatgcagcaccaccagcaacag
caacagccgccgcctcatcaattccagcaacagccgcagatgatgcgtcagccttctgct
tcttctactactctcggtggtggttaccaggactatcaccaacagcaacagcaacagcct
cctcctcctcatcccgctttcgacggccatgacaactttgctgccaaaaggatgaggaaa
atcggacagcgaagagctgttgattacacaagcactgtcgtgcgacatatgcagactcgt
ttatggcaacaagattcacgagacagaacagtattacaacctacaccagctgcagcaatt
gatatgttaccgacagttgcatattcagataatccatccaccagctttgctgcaaagttt
gttcacacatcacttaacaaaaaccgctgttcaatcaaccgtgttctgtggaccccgact
ggcaggcgacttataactggttcacacagcggagaattcacattatggaacggtcaatct
ttcaattttgaaatgattctgcaggctcatgatcagccaatcagatctatggtatggagt
tataatgacaattggatggtcacgggtgatgatggaggctctataaagtattggcaaaac
aacatgaacaatgtgaaagctaataaatctgcacataaggaatctgttcgtgatctaagc
ttttctagaacagatttaaagttctgttcatgttctgatgacacaactgttaaagtttgg
gactttgctcgttgccaggaagaacgttctttaaccggccatggttgggatgtgaagagt
gttgactggcaccctaccaagtctttgctagtttctggtgggaaagacaatcttgtgaag
ctctgggatgctagatctggaagagaattatcttcatttcatgggcacaagaataccgtt
ctttgtgtgaaatggaatcaaaatggtaattgggtattaactgcttctaaggatcaaatt
atcaagctatatgacattagggctatgaaagaactgcaatcttttcgtggtcataagaag
gatgttactgcacttgcttggcatccatttcatgaggagtattttgtcagtgggagtttt
gatggatcaatctttcactggctagttggacatgaaactccacaaattgaaattcagaat
gcacatgatagcggtgtttgggatcttgcatggcatcccattgggtatcttctttgcagt
ggcagcagtgacaacacaacaaagttttggtgcagaaataggcccggtgatccagctcgt
gataaattcagcatgggtaataataatcaaggttacaatgaacaaaatttcggtcttccg
ggccgcatgcctgtcggttttctggggcccgagccaccaactacccccggaccatttgct
ggattgaatcggaacgaaggcactattcccgggattggagttgcaatgccactgtcgtta
gatacatcacagggagaccaaaaaccgcccatatcctcatcaatgcccctaggtgctcca
ccattaccaccaggcccacatccgtcactgtttcaacaaccatatcaacaaaacccacag
caacaccaccagcaactgcagccaccaaacatgcaaccactgcaacatccaactcatatg
ccacttttgccacattctcatttgccccgcccaccgctcccgatgccacctcataacatg
cccatgcttggtcaaatgggtacaatgaaccagatgggcccacctatgcagcaaggccat
tttatgggcatgaaccccatgcattcaggaccgggaggtgcgccaccaggcagcattcca
aatatgcaggggccgtttaacctacctcaaggggcaccaatgcccccaatgccagggtta
ggtccttatcagcctgggaatccaagtggtggtgtgatgggaacgggtcaacaaaatttt
ggtacgcctacgggaattgcaccaccgctgccacctggaccgccgccacatggacaagcg
cctcagtag

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