Brachyspira hyodysenteriae WA1: BHWA1_02325
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Entry
BHWA1_02325 CDS
T00865
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhy
Brachyspira hyodysenteriae WA1
Pathway
bhy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BHWA1_02325 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhy03021
]
BHWA1_02325 (rpoB)
03400 DNA repair and recombination proteins [BR:
bhy03400
]
BHWA1_02325 (rpoB)
Enzymes [BR:
bhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BHWA1_02325 (rpoB)
Transcription machinery [BR:
bhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BHWA1_02325 (rpoB)
DNA repair and recombination proteins [BR:
bhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BHWA1_02325 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ACN84779
UniProt:
A0A3B6VAT3
LinkDB
All DBs
Position
2625386..2628907
Genome browser
AA seq
1173 aa
AA seq
DB search
MANNIQIDNKVYPERGVEFAKKYRMENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDV
PENKRKNEGLQEVLTSIFPIVASNEKMQIEFISYSIGEPKITEKEARRRDKTYAYPFKIK
VQLTVRDPERIIEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFNRSDRDAMF
VAKIIPDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYEVDNI
SLEKLSDENSKEALIGRRSYSTVYDTENPDEIILNPGELINPNLAERLLMSGIKEISVLN
MEAIKDNVTIINTLDKDTTKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYAL
GDVGRYKLNKRLNFPESEQDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRVRSVG
ELLSIQIKAGFTRMERIAKERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQ
NNPLSEITHKRRLNALGQGGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLAT
YAKINKHGFLETPYRKVVDGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTR
FRSEFPYSSPDQVQYMDVSPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEA
PIVGTGVEAKICQPGTGIAVHAKRAGKVIKVVHNEIVIKPTKQNSDDDLDVYELVKYQRT
NQDTNYHQRPVVNVGDVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLS
RRLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKA
GDILVGKVTPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENG
DELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLN
PLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEEALREAFVASGMNPNGKVRLY
DGRTGEPFKNDVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEM
EVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGL
GLNITIHDEEGNQLPSTEKELRQKTKKQTKIFK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatattcagatagataataaagtatatccggaaagaggggtagagttcgca
aaaaaatataggatggaaaacggacgtgtaaacttttcacgcaccgcttctgtaatagaa
cctcccgatctcctcgctatacaaaaagaatcttatgaaagcttccttcaaaaggatgtt
cctgaaaataagagaaaaaatgagggattgcaggaagttttgacttctatattccctata
gtagcttctaatgaaaagatgcaaatagaatttatttcttactctataggtgagcctaaa
attacagaaaaagaggctagaagaagagataaaacttatgcttatccttttaaaataaaa
gtacaattaacagtaagagaccctgaaagaatcattgaacaggaaatatttgtgggtgat
atacctgctatgacagacagaggtacatttattgttaatggtgctgaacgtgttatagtt
tctcagattcatagatctccaggtgtagttttcaaccgcagcgacagagatgctatgttc
gtagctaagataattccagatagaggtacttggcttgaatttgaactcgataccaaaaaa
gatataatgtatgttagaatagacagaaagaaaaaacttcctgttactgtatttttaaga
gctattggtatcacaactaatgaagaaattttgaaattattttatgaagtagataatata
tcattagaaaaactttcagatgaaaattctaaagaggctttaataggtagaagatcttat
tctacagtatatgatacagaaaaccctgatgaaattatattgaatccgggcgaacttatc
aaccctaacttagctgaaagacttttaatgagcggtattaaagaaatatccgtattaaat
atggaagcaataaaagacaatgttaccataattaatactttagataaagatacaactaaa
aaccaagaagaggcttgtactaaaatatataatgttataagacctggagagcctgcttta
atagaaaacgttgtaagaacttgtaatgatttagtatttgaccctaaatcctatgcttta
ggagatgtgggacgttataaattaaacaaaagattgaatttcccagaaagcgaacaggat
aaagttttaagacataaagatataatagaaactattcgctttttgattaaagtattcata
aacgaagaacaattggatgatattgaccatttaggaaacagacgcgtaagaagtgtaggt
gaattattatctatacaaataaaagccggcttcactagaatggagcgtatagctaaagaa
agaatgcagatgcaggatatggaggcagtaactcctcaatctcttgtaagcattaaactt
atacaagctgtaataaaagagttcttcggtacaaaccaattatctcagttcatggatcag
aacaatccattatcagagattacacataaaagaagattaaatgccttaggtcaaggaggt
cttacaagagacagagcaggtttcgaagtaagagacgtacaccatacacactatggtaaa
atatgtcctattgaaactcctgaaggtccaaacatcggacttatagtatctcttgctact
tatgctaaaattaataagcatggtttcttagagactccatatagaaaggttgttgatgga
aaagtaacagatgaaatagaatatttgacagctcatgatgaggaaaaatatcatatagca
gatgctaatgctcctttgaatgaagacggtactttcaaagataatcttatttcaacaaga
ttcagaagtgaattcccatattcttcaccagatcaggtacagtatatggacgtttcacct
cagcagattgtatcactttcaagctcattgataccattcttagagcatgacgacgctaac
agagcattgatgggttcaaacatgcagcgtcaaagtgtacctcttttgtatcctgaagct
cctatagttggtacaggtgtagaagcaaaaatatgtcagcctggtacaggtatagcagtt
catgcaaaaagagcaggtaaagttattaaagtagttcataatgaaatcgttataaaacct
actaaacaaaacagtgatgatgatttagatgtatatgaattagtaaaatatcagagaact
aaccaagatacaaattatcaccaaagaccagttgttaatgttggcgatgtagttaaggct
ggaggacttttagctgacggacctgctacagatcatggtgaattagcattaggaagaaat
gttcttgctgctttcatgatttttgaaggatataacttcgaggatgctattcttttaagc
agaagattagttcaggaagatgtatttacttccatacacatagaagagttttcagttgaa
gctcgtgaaacaaaattagataaagaaaatattactagagatatacctaatgtatcagat
gcagctttcaaaaatttggatgaaagaggtatcgtaagaataggtgctaaagtaaaagca
ggagatatattagttggtaaagtaactcctaaaggtgaaacagaaatcactcctgaatac
agacttcttcactcaatattcggtgagaaggctagagatgtaaaagatacttctttaaga
gttcctcatggtaaagatggtactgttatagatgtaagagtttacagcagagaaaacggt
gatgaattaaagcctggcgtagaagaagttgtaaaagtattccttgctaaaaagcgtata
atacaggaaggtgacaaaatggcaggtcgtcacggtaacaaaggggttgttgctagaatc
atgcctatagaggatatgccattcttagaagatggtactccagtagatatatgtcttaac
ccattgggtgtaccttctcgtatgaatattggtcaggttattgagatgttgctcggttgg
tctggtcataaaatgggacttaaatatgcttgtcctgtatttgaaggtcctaaggaagag
gctttaagagaagcattcgttgcaagcggtatgaatcctaatggtaaagttagactttat
gacggaagaacaggagagcctttcaaaaatgatgtagctgtaggatatatgtatatgctt
aagcttaatcacttggttgaagacaaagtacatgctagaagtacaggtccttactcactt
gttactcagcagcctttgggaggtaaatctcaattcggaggtcagagattaggagagatg
gaagtttgggcattagaggcttatggagctgctaatatgcttcaagagttcttaactgtt
aaatcagatgatatgacaggacgtgctagaatatatgaatccattgttaaaggcgatgtt
atatcctctccgggtataccagaaagctttaacgtattagttcaagagcttagaggtttg
ggtcttaatattactattcatgatgaagaaggcaatcagcttccttctactgaaaaagaa
cttagacaaaaaactaagaaacaaaccaagatttttaaataa
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