Brachyspira hyodysenteriae WA1: BHWA1_02326
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Entry
BHWA1_02326 CDS
T00865
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bhy
Brachyspira hyodysenteriae WA1
Pathway
bhy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BHWA1_02326 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhy03021
]
BHWA1_02326 (rpoC)
03400 DNA repair and recombination proteins [BR:
bhy03400
]
BHWA1_02326 (rpoC)
Enzymes [BR:
bhy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BHWA1_02326 (rpoC)
Transcription machinery [BR:
bhy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BHWA1_02326 (rpoC)
DNA repair and recombination proteins [BR:
bhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BHWA1_02326 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACN84780
UniProt:
A0A3B6VBP5
LinkDB
All DBs
Position
2628927..2633129
Genome browser
AA seq
1400 aa
AA seq
DB search
MQFSNFDQIKISIASPQVMREWSYGEVKKPETINYRTLRPERDGLFCEKIFGTTKEYECY
CGKFKSIRYKGVVCDKCGVEVTHFKVRRERMGHIELAAPVAHIWYYRNTPSRIGLLLNMN
IAHLRSVLYFERYVVIDAGDSSYSKGDLLTEDEYNEALDRYGDNIRIGIGAEGIRDMLKD
LDMDEEIRKLREEMIKKGEKSDRRLRKRLEIFEDFKASGNDPTWMILDVVPVIPPELRPM
VQLDGGRFATSDLNDLYRRVINRNIRLRRLLVLRAPDIIIRNEKRMLQEAVDALFDNSRR
KKVVKGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVAGPRLKMHQCGLPKKM
AVELFKPFIMKKLVEINSAHNIKSAKRFVEEGREEVWGVLEDIAKEHPVLLNRAPTLHRL
GIQAFEPVLVEGKAIQLHPLVCHAYNADFDGDQMAVHTPLSAEAQIEAWTLMLAPHNILN
PANGEPIVNPTQDIVLGISYLTKLRTGSKGEGKIFSSPKDALLAYDNNLVELESRIKVLM
KNKDGEEEFVETSVGRLKFNEVIPEDFRYQNRDFNSKDLAKFIHEVYLKHGTAVTVNMLD
DIKELGYQSATVFGSTISIADILIPPMKKQEIEEATKQVEFIENQYMNGIITTEEKKQKV
MDLWTTVEGRITEAMMDNLRQDQDGFNPVYIMADSGARGSKQQIRQLASMRGLMAKPSGE
IIELPIISNFKEGLTVQEYFISTHGARKGLADTALKTSSAGYLTRKLVDVAIGVVVSEHD
CGTVKGIAIEAIKNGDEIKKSLKERVVGFFTSEHIYHPVTKELICSANTEITEEIGDLIE
KAGIEKISIRHPLTCESRMGVCQKCYGRSLSTNNLASIGEAVGVVAAQSIGQPGTQLTMR
TFHIGGVATQMVEENEIKVNYPIYIEQFSNYVVQPNGIKITARKGDLVIRRVLDKWEKST
LKDIITEHNTKVLIGDVIATLKDGTEIKATYNGTFKITDDDKYIMITGDKHTIVIKVGSE
YKVDEHVFIEANTVIASFDTYNEPIISEKSGIVRYQDIIPGRTLVEEIDDQTGNKTNIIQ
EFKDSSMQPKILIVGDNDTFETDIPNGAQLMVENNQKVEVGEVIAKTTRIQQKSRDITGG
LPRVQELLEAQKPKDTAIIAGIDGEVEIGGSHKGKKVVKIRNEFDETKHLVPHGKMLLVR
NGDQVKTGTQLCAGKINPHDILETQGDLALQTYLLEEIQTVYNQQGVGINDKHFALIIRQ
MLRRLEITDPGDTKYIVGQYVDKYEFEEENRRYEEAGGSPASGKPVLLGLTKAALNTESF
ISSASFQETTKVLTNAAIKGKVDKLLGLKENVIIGHLIPAGTGVKLYNKLHVYNKQSGDL
DKKDNIDNSAKEEEVMQITV
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcaaactttgaccaaataaaaattagtatagcaagtcctcaggttatgaga
gaatggagttatggtgaagtaaaaaaacctgaaactatcaactacagaactttaagacct
gaaagagacggacttttttgtgaaaagatattcggaactactaaagaatatgaatgttac
tgcggtaaattcaaaagtattcgttataaaggtgtagtttgtgataaatgcggtgttgaa
gttactcatttcaaagttagaagagagagaatggggcatatagaattagctgctcctgtt
gctcatatttggtattatagaaacactccttcaagaataggacttcttctaaatatgaat
atagctcatttaagaagcgtactttattttgaaagatatgttgttattgatgctggagat
agttcttattctaaaggcgatcttttaactgaagatgaatataatgaagctttagataga
tatggtgataatataagaataggtataggtgctgagggcataagagatatgcttaaagac
cttgatatggacgaagaaatcagaaaactcagagaggaaatgattaaaaaaggtgaaaag
agtgataggcgtttaagaaaacgtcttgaaatctttgaagactttaaagcaagcggaaat
gatcctacttggatgatacttgatgtagttcctgttattcctccagagttaagacctatg
gttcagcttgacggcggaagattcgctacttcagatttgaatgatttatatagaagagtt
ataaacagaaatattcgtttaagaagattattggttttaagagctcctgatattatcata
agaaatgaaaagagaatgttgcaagaagcagttgatgctttatttgataacagcagaaga
aagaaagtagttaaaggaccaggaaacagacctttaaaatctctttctgatatgcttaaa
ggtaagcaaggtcgtttcagacagaaccttttaggtaaacgtgttgactattcaggccgt
tctgttatcgttgcaggtcctagacttaaaatgcatcaatgcggacttcctaaaaaaatg
gctgtagaattattcaagccattcataatgaaaaaattagttgaaattaattcagctcat
aatataaaatctgctaaaagatttgtagaagagggcagagaagaagtttggggagtattg
gaagatattgctaaagaacatccagttctattaaacagagcaccgactcttcacagactt
ggtattcaggcatttgaacctgtacttgttgaaggaaaagcaattcagcttcacccatta
gtatgtcacgcttataacgctgactttgacggtgaccagatggctgtacatactccgctt
tctgctgaggctcagattgaggcttggactttgatgcttgctcctcataatatattaaac
cctgccaacggtgaacctattgttaaccctacacaggatatagtacttggtatcagctat
cttactaaattaagaacaggaagtaaaggtgaaggaaagatattctcatctcctaaagat
gctttacttgcttatgataataatttggtagagcttgaatcaagaattaaagttttaatg
aaaaataaagatggagaggaagaattcgttgaaacttctgtaggaagattaaaattcaat
gaagttattcctgaagatttcagatatcaaaacagagattttaacagtaaagatttagct
aaattcattcatgaagtatatttgaaacatggcacagctgtaacagttaatatgcttgat
gatattaaagaacttggttatcaaagtgctacagtatttggttctactatttctattgct
gatatacttatacctccgatgaaaaaacaagaaatcgaggaagctactaaacaggtagag
ttcattgaaaatcagtatatgaacggtattatcactactgaagagaaaaagcagaaggtt
atggacctttggactacagttgaaggtagaataactgaagctatgatggataatttaaga
caggatcaggacggatttaatcctgtatatataatggctgattccggtgcgagaggttct
aaacagcagataagacagcttgctagtatgagaggtttgatggctaagccttcaggtgag
attatcgaacttcctattatttcaaactttaaagaaggtcttactgtacaggaatacttt
atttctactcacggtgctagaaaaggtcttgcagatacagcattaaagacttcaagtgct
ggttatcttactagaaaactagttgatgttgctattggggttgttgtttcagagcatgac
tgcggtactgttaaaggtattgctatagaggctataaaaaacggagatgaaatcaaaaaa
tctcttaaagaacgtgttgttggtttctttacaagcgagcatatatatcatcctgttact
aaagagcttatatgttctgctaatactgaaattacagaagaaataggtgatttaatagag
aaagctggtatagaaaaaatcagcattagacatcctcttacttgtgaaagcagaatgggt
gtatgtcagaaatgttatggtagaagtttatctactaataaccttgcttctattggggag
gctgttggtgtagttgctgctcaaagtattggtcagcctggtacacagcttacaatgaga
actttccacatcggtggtgttgctactcagatggtagaagaaaatgaaattaaggtcaat
tatcctatatatatagaacaattctctaactatgttgttcagcctaatggtattaaaata
acagctagaaaaggtgatttggttattagaagagttttagataaatgggaaaaatctact
ctaaaagatattataactgaacataatactaaagtacttataggagatgttatagctact
cttaaagatggtacagaaattaaagctacttataatggtactttcaaaatcactgatgat
gataaatatataatgattacaggtgataagcatacaattgtaattaaagttggaagtgaa
tataaagtagatgaacatgtattcatagaagctaatacagttattgctagcttcgatact
tataacgaacctatcatttctgaaaaatccggtattgtaagatatcaggacatcatacct
ggcagaactttggttgaagaaatagacgatcaaacaggtaataaaactaatattattcaa
gagtttaaagattctagcatgcagcctaagatattgatcgtaggtgataatgatactttt
gaaactgatatacctaatggtgctcagcttatggtagaaaataaccaaaaagttgaagta
ggagaggttattgctaaaactactcgtatacagcagaaaagtagggatattacaggaggt
cttccaagagtacaggaattacttgaggctcagaaacctaaagatactgctattattgct
ggtattgacggtgaggttgaaatcggaggttctcataagggtaaaaaagtagttaaaatc
agaaatgaatttgatgaaactaaacacttagtacctcatggtaaaatgttattggtaaga
aacggagaccaagtaaaaacaggtactcagttatgtgctggtaaaataaaccctcatgat
atattggaaacacaaggggatttggctttacaaacttatttgcttgaagaaattcaaaca
gtatacaatcagcagggtgtaggtattaacgataagcacttcgctcttatcataagacag
atgcttagaagacttgagataactgatccaggcgatactaaatatattgttggtcagtat
gttgataaatatgagtttgaagaagaaaacagacgttatgaagaggctggcggttctcct
gcaagcggtaagcctgtacttttaggcttaactaaagctgctcttaatactgaaagcttt
atatcttctgcttcattccaagaaactactaaagtattgactaatgctgctattaaagga
aaagttgataaattgcttggattaaaagaaaatgttattataggacacttaatacctgct
ggtactggtgttaaattatataataaacttcatgtttacaacaagcaaagcggagacttg
gataagaaagataatatagataatagtgctaaagaagaagaagttatgcagataactgta
taa
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