Brachyspira hyodysenteriae JR80: JR80WH_000521
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Entry
JR80WH_000521 CDS
T11265
Name
(GenBank) DNA repair helicase XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
bhyj Brachyspira hyodysenteriae JR80
Pathway
bhyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhyj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JR80WH_000521
09124 Replication and repair
03420 Nucleotide excision repair
JR80WH_000521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhyj03021
]
JR80WH_000521
03400 DNA repair and recombination proteins [BR:
bhyj03400
]
JR80WH_000521
Enzymes [BR:
bhyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JR80WH_000521
Transcription machinery [BR:
bhyj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JR80WH_000521
DNA repair and recombination proteins [BR:
bhyj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JR80WH_000521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
NTPase_1
DEAD
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
XOZ55695
LinkDB
All DBs
Position
635550..637244
Genome browser
AA seq
564 aa
AA seq
DB search
MDKNAPLIVQGDGTILLDVSTKHFEEIRNFMLVFAELVKSPEYIHTYRITLVSLWNAASL
NYTSEQILNFLRKYTSYEIPKNIVKQIETSIEKYGRIKIIKEDDKYYLISEDKNIIDEIL
HYKLMTKYIKSEINKNKLEIDATYRGHIKLALINIGYPVQDLAGYKTGEEYHFHMREKLA
SSGDDFALRDYQKNSVDAFYADGKPEGGAGVIALPCGTGKTVVGIAAMHKTQTKTLIIVT
GVTACRQWRDEILDKTDIPPEDIGEYNGLNKEIKPITIATYKILTYRKNKESPFVHFELF
FQHNWGLIIYDEVHLLPAPIIKLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDI
PWRELEEKKFIAEAYCYDIRIPLDDSHRSDYVISSDKVKFRIASENVLKYTIVKKIIEKL
EGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQSERDIIYKKFKTGEIKILIVSKVANLA
VDLPDANVLIQISGTFGSRQEEAQRLGRVLRPKKGENKSYFFSIITTDTKEEDFAHKRQL
FLTEQGYHYELVDKDSFEELEFNN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
ttggataagaatgctcctcttatagtccagggcgatggtactattctattagatgtaagt
actaaacattttgaagaaataagaaatttcatgttagtatttgctgaattagtaaaaagt
cctgaatatatacatacatatagaataacattagtctctttatggaatgctgctagtttg
aattacacatcagagcagatacttaatttcttgagaaagtatacatcttatgaaattcca
aaaaatatagtaaagcagattgaaactagtatagaaaaatatggaagaataaaaataata
aaagaagatgataaatactatcttataagtgaagataaaaatatcatagatgaaattctt
cattataaattaatgactaaatatataaagtcagaaataaataaaaataaattagaaata
gatgctacatacagaggacatataaaacttgcacttataaatataggataccctgttcaa
gatttagcaggatacaaaacaggcgaagaatatcatttccatatgagagaaaaattagct
tcaagcggagatgattttgctttaagagattatcaaaaaaattctgtagatgcattctat
gctgatggaaaacctgaaggcggtgcaggagttatagctcttccatgcggtactggtaaa
accgttgtaggtattgctgcaatgcataaaactcagacaaaaactcttataatagttact
ggtgttacagcatgccgtcaatggagagatgaaatactagataaaacagatattcctcct
gaagatataggagaatataacggacttaataaagaaatcaaaccaataactatagctaca
tataaaatacttacatacagaaaaaataaagaatctccattcgtgcattttgaattattc
tttcagcataattggggattaataatatacgatgaagtgcatttgcttcctgcccctatt
ataaaacttactagtgaaattcaaagtatgagaagattaggtcttactgctactttggta
agagaagacggacttgaaaaagatgtattctgtcttatagggcctaaaaaattcgatata
ccttggcgtgaattagaagagaaaaaattcatagctgaagcatattgttatgatataaga
ataccattagatgattctcatagatctgattatgttatatcaagtgacaaagtaaaattt
agaatagcaagcgaaaatgttcttaaatatacaatagtaaaaaagattattgaaaaactt
gaaggaaaaaatattcttataataggtcagtatttggatcaattaaatgagatgaaaaaa
agaacaggatatactataattacaggaaaaactcctcaaagtgaaagagatattatatac
aaaaaatttaaaaccggagaaataaaaatacttatagtaagtaaggttgccaatttggct
gttgacttgcctgatgctaatgttttaatacagatttctggaactttcggttcaagacag
gaagaagctcaaagattaggaagagttcttcgccctaaaaaaggtgaaaataaaagctat
ttcttttcaatcataactacagatactaaagaagaagattttgctcataaaagacaatta
tttttaacagagcaaggatatcactacgaattagtagataaagactcatttgaagaatta
gaatttaataattaa
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