Brachyspira hyodysenteriae JR80: JR80WH_000537
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Entry
JR80WH_000537 CDS
T11265
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bhyj Brachyspira hyodysenteriae JR80
Pathway
bhyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JR80WH_000537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhyj03019
]
JR80WH_000537
Messenger RNA biogenesis [BR:
bhyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JR80WH_000537
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XOZ55710
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Position
663676..665580
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AA seq
634 aa
AA seq
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MNNNDKIRIIPLGGVQEIGMNMTVIEYGNEVLIVDCGFMFPRYHMLGIDYVIPDTSYLED
KNIIGLILTHGHEDHIGAIPHFLRKFPDIPIYGSRLTLAFLRAKLNDYKNEYKDTKLYEV
EPRNKIQLGMNFDIEFIRVNHSIPDGVGIAITTPLGVIIHTGDFKIDLNPTTDKFIDLYK
FAEYGENGVLLMLADSTNCQRDGFSMSESVVQNNMTPLFDYSDGMIIVAVFASSIERIQD
LVTAAKVNNKFVAFSGRSLIKFTKIAQDMGYLNLYDIVIPIDKINRYPREKIVCITTGTQ
GEPYSSLSLIAAEAHKHIKVEDGDMVIFSSSVIPGNEMAVTRMINNLFDLGAKMVGEDKK
LLHVSGHASSEDLKLMYRLVKPKYFIPIHGEKRHLITHIKLVENLNGLDTKGFLLYNGDV
LEIDETLEAKITEPIEIRNIYVDGKGVGDLEESIFYDREQLSLNGVVVANVVAKKNSTGQ
YDIKVDLESKGFTYTGGEKEGIINKTEQLREEGISSAIEAVRKLLNRNKRTPSTIKYEVR
EALRKKFIQIIGREPVIFVCLYMDHVYVEQSYNINDENNNAVKNNIENIENNNDEEKTKC
HTKKKKRIKKTVTKKNTSQIKRLKSKKKKAAKES
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaataataatgataaaataagaatcatacctcttggcggagtacaagaaataggtatg
aatatgactgttatagaatatggaaatgaagttttaatagtagactgcggatttatgttc
cctagatatcacatgcttggtatagattatgtgattcctgatacttcatatttagaagat
aaaaatatcataggacttatacttactcatgggcatgaagatcatataggagcaatacct
catttccttagaaaatttcctgatattcctatatacggttcaagacttactttggctttt
ttaagagctaaattaaatgattataaaaatgaatacaaagatacaaaattatatgaagtt
gagcctagaaataaaatacagttaggaatgaatttcgatatagagtttataagggttaat
catagtatacctgacggtgtaggaatagctataacaacacctcttggagttataatacat
acaggagatttcaaaatagatttgaatcctacaacagataaatttatagatctatataaa
tttgctgaatatggagaaaacggagttcttcttatgctggcagattccacaaactgtcag
agagacggattttctatgagtgaaagtgttgttcaaaacaatatgactccccttttcgat
tattctgacggtatgattatagttgccgtatttgcaagcagtatagaaagaatacaggat
ttagtaaccgcagcaaaagttaataataaattcgtagcattttcaggaagaagtttaata
aaattcacaaaaattgctcaggatatgggatatttaaatctttatgatatagttatacct
atagacaaaataaacagatatcctagagaaaaaatagtatgcataaccacaggaactcag
ggagagccttattcttctctatcacttatagctgcagaagctcataagcatattaaagta
gaagacggcgatatggttatattttcatcaagcgttatacctggtaatgaaatggctgtt
actagaatgataaataatctgtttgatcttggtgctaaaatggttggcgaggataaaaaa
cttcttcatgtatcaggacatgcttcaagcgaagatttaaagttgatgtacagattagta
aaaccgaaatattttattccaatacatggtgagaaaagacatttaatcactcatataaaa
ttagttgagaatttaaatggattagatacaaaaggattccttctttataatggagatgta
cttgaaatagatgaaactttagaagcaaaaatcacagagcctatagaaataagaaatata
tatgttgatggcaaaggcgtaggagatttggaagaaagtatattctatgatagagaacaa
ttatctcttaacggcgtagtagttgccaatgttgtagcaaagaaaaactctacagggcaa
tatgatataaaagttgatttagaaagcaaaggttttacatatacaggcggagaaaaagaa
ggtataataaataaaacagaacagttaagagaagaaggaataagttctgcaatagaagca
gttagaaaattattaaatagaaataaaagaactccttctacaataaaatacgaagtgaga
gaagctcttcgtaaaaaatttattcagataataggcagagaacctgtaatatttgtatgc
ctatatatggatcatgtttatgtagagcaatcatataatattaacgatgaaaataataat
gctgttaaaaataatatagaaaatatagaaaacaataatgatgaggagaaaacaaaatgt
catacgaagaagaaaaagagaatcaagaaaacagtaacgaagaagaatacatcgcaaata
aaaagactgaaatcaaaaaagaaaaaagcggcaaaagagagttaa
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