Brachyspira hyodysenteriae JR80: JR80WH_001028
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Entry
JR80WH_001028 CDS
T11265
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
bhyj Brachyspira hyodysenteriae JR80
Pathway
bhyj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bhyj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JR80WH_001028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhyj03021
]
JR80WH_001028
Transcription machinery [BR:
bhyj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JR80WH_001028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r3
Prominin
DUF6353
KORA
DUF4806
DUF7769
MutS_III
ACT_ACR9_3rd
Motif
Other DBs
NCBI-ProteinID:
XOZ56177
LinkDB
All DBs
Position
complement(1204686..1205540)
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AA seq
284 aa
AA seq
DB search
MSESRLRTNTEEQNNISLYFADAKKEKLLTREEEIELTKRLKEGDAEARSKLIRSNLRFV
ITIAKQYKNSGLLLEDLISEGNLGLIIAADRFDPDKGYHFISYAVYWIRQSILRAINEKS
RLIRLPLNKAMDLVDLERAVHQYYYKSGYTPDVNELATILNKDPNDILHIMSMSTEHISL
EGEYNYDGMKDRLIDTIEDKTSKNVEETAINKELMEELKTAIESLSDIEKQIINARYGID
QERKTLKEVGEMFSFTKERIRQIEKKALRKMHSQKYSSLKDFLK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaagcaggttaagaactaatacggaagaacagaacaatatatcattatatttt
gcagatgctaaaaaagaaaagcttttaactagagaagaagaaatagagctcactaagaga
ttaaaagaaggggatgcagaagctagatccaaactaattagaagtaatttgagatttgtt
atcacaatagcaaaacagtataaaaacagcggacttttattagaagatttaataagtgag
ggaaatttaggccttataatagcagctgacagatttgatccggataaaggctatcacttt
atatcctatgctgtatattggataaggcagagcattcttagggctataaatgaaaaatca
agacttataagacttcctttaaataaagctatggatttggtagatttagaaagagccgtg
catcaatactattataaaagcggatatactcctgatgttaatgaacttgcaaccatttta
aataaagaccctaatgatatacttcatattatgtctatgagtacagaacatatttctctt
gagggcgaatataattatgatggtatgaaagataggcttatagatacgatagaagataaa
acttccaaaaatgttgaagaaactgctataaataaagaacttatggaagaattaaaaaca
gccatcgaaagtttatcagatatagaaaagcaaatcattaatgcaagatatgggatagat
caggaaagaaagactcttaaagaagtaggggagatgttctctttcactaaagagcgtata
agacagatagaaaaaaaagcattaagaaagatgcattctcaaaaatacagttcattaaaa
gacttcttaaaatag
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