Brachyspira hyodysenteriae JR80: JR80WH_002391
Help
Entry
JR80WH_002391 CDS
T11265
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bhyj Brachyspira hyodysenteriae JR80
Brite
KEGG Orthology (KO) [BR:
bhyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bhyj03032
]
JR80WH_002391 (topA)
03400 DNA repair and recombination proteins [BR:
bhyj03400
]
JR80WH_002391 (topA)
Enzymes [BR:
bhyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JR80WH_002391 (topA)
DNA replication proteins [BR:
bhyj03032
]
Prokaryotic type
DNA Topoisomerases
JR80WH_002391 (topA)
DNA repair and recombination proteins [BR:
bhyj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JR80WH_002391 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
zf_Rg
Motif
Other DBs
NCBI-ProteinID:
XOZ57501
LinkDB
All DBs
Position
complement(2717721..2719871)
Genome browser
AA seq
716 aa
AA seq
DB search
MATTTEEKVKKTASKKTKDKKESKKKKLVIVESPAKAKTINRYLGSDYLVMSSMGHLIDL
PRSRLAIDVDHGFEPEYITIRGRAKILNDLKKEAKKAEEVLLAADDDREGESIAWHIGNK
IRGVNSAVPIKRIVFHEITKDALKEAIDQPRDIDISKVNAQKARRVLDRLIGYNLSPLLW
DKIKRGLSAGRVQNVALLIICNREDEIETFVPVEYWTFGVFLKHKNKEFLAELQKYKGEK
PDLKTKQDVEDIMEHLKDKTYTVASIEVKDRLRNPTAPYTTSKLQQAASSALGYSASKTM
QVAQSLYEGVDIAGEATGLITYMRTDSVRISPVAQEQAKEFIEKEYGSNYLPPEPPTYSV
KKNAQDAHEAIRPTNVFLTPDSIKEYLKTDQYKLYKLIWERFVSSQMLPAKMKNTRAIIV
AGDCEFSLSSSKIEFDGFMKVLTIDKEDKEKASKMPNLSKDDVCEFVENNPQQHFTTPPP
RYTDASLVKILEESGIGRPSTYAPTIKTIISRHYVQRKGKQLVPTELGKLVNELISENFP
ELVNINFTADMESKLDKIEDDNIEWNNILKEFYPHFLDTLKTATENINNMKDFFNEETDF
VCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFGVCPKCGGDITLKRSKRGREFYGC
SNYPKCDFVSWDKPLQEPCPKCGGLMVEKNIKNKGLFKVCIKEDCGYSEEIKEDEE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacaacagaggaaaaagtaaaaaaaacagcaagtaaaaagacaaaagataaa
aaagagtctaaaaagaaaaaacttgttatagtggagtctccggcgaaagctaaaacaatt
aatagatatttaggctctgattatcttgtaatgtcatctatggggcatttaatagatttg
cctagaagcagactggctatagatgtagatcatggatttgaacctgaatacatcactata
agaggaagagctaaaatattaaatgatttgaaaaaagaggcaaaaaaagcggaagaagtt
ttgctagctgccgacgatgatagagagggagaaagcatagcttggcatataggtaataaa
atcagaggggtaaactctgctgtgcctataaaaagaatagtttttcatgaaataacaaaa
gatgcattaaaagaggctattgatcagcctagagatatagatatttcaaaagttaatgct
caaaaggcaagaagagtattagacagacttatcggttataatttaagccctttactttgg
gataaaataaaaagaggactttctgcaggaagagtacagaatgtagctttgcttattatt
tgtaatagagaagatgaaattgaaacttttgtacctgtagaatattggactttcggagta
tttttaaagcataaaaataaagagtttttagcagaacttcaaaaatataaaggcgaaaag
ccagatttaaaaactaaacaagatgttgaagatataatggagcatcttaaagacaaaact
tatactgttgcaagtatagaagtaaaagacagattaagaaaccctacagctccatatact
acaagtaaacttcagcaggcggcaagcagtgcattaggatacagtgcttcaaaaactatg
caggtagctcagtcactttatgaaggtgttgacattgcaggagaggcaactggtttaata
acttatatgcgtactgacagtgtaaggatatctcctgttgctcaggaacaggctaaagag
tttatagaaaaagaatacggaagcaattatttacctccagaacctcctacatattcagta
aaaaagaatgctcaggacgctcacgaagctataagacctactaatgtatttttaactcca
gacagcattaaagaatatttaaaaacagatcaatataaactgtataaacttatatgggag
agatttgtatcatctcaaatgcttccagcaaaaatgaaaaatacaagagctataatagtt
gcaggcgattgtgagttttctctttcttcttcaaaaatagaatttgacggatttatgaaa
gttcttacaatagacaaagaagataaagaaaaagcttcaaaaatgcctaatttatcaaaa
gatgatgtatgtgaatttgttgaaaataatcctcagcagcatttcacaacacctcctcca
agatatacagatgcttcattagtaaaaatattagaagaatcaggaataggaagaccttct
acttatgccccaactattaaaacaataatatcaaggcattatgtacagagaaaaggaaaa
caattagtacctacagaattaggaaagcttgttaatgagctcataagcgaaaatttccct
gaacttgtaaatattaactttactgccgacatggaaagtaaacttgataaaatagaagac
gataatatagaatggaataatatattaaaagaattctatcctcattttttggatacattg
aaaacagctactgaaaatattaacaatatgaaagactttttcaatgaagaaactgatttc
gtatgtgaaaaatgcggtaagaagatgattaaacgtttgggaagatacggatattttata
gcttgttccggattccctgaatgtaaaaatactaaaggaatatcttttggtgtttgtcct
aaatgcggaggcgacataacattaaaacgttcaaaaagaggaagagaattctatggttgt
tctaattatcctaaatgcgatttcgtaagttgggataaacctcttcaagaaccttgtcct
aaatgcggcggactcatggttgagaagaatattaaaaacaaaggattgtttaaggtttgt
atcaaggaagattgcggttattcggaggaaatcaaagaggacgaagaataa
DBGET
integrated database retrieval system
