Bordetella hinzii: ACR54_03005
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Entry
ACR54_03005 CDS
T04004
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bhz
Bordetella hinzii
Brite
KEGG Orthology (KO) [BR:
bhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhz03019
]
ACR54_03005 (hrpB)
Enzymes [BR:
bhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACR54_03005 (hrpB)
Messenger RNA biogenesis [BR:
bhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACR54_03005 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
NACHT
nSTAND3
AAA_25
SLFN-g3_helicase
ResIII
HA2_N
SRP54
AAA_30
TsaE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AKQ56308
LinkDB
All DBs
Position
complement(3126985..3130875)
Genome browser
AA seq
1296 aa
AA seq
DB search
MPETPRPAAARRPAPRPDRPERADRPERPIPVITYPEDLPVSARRQEIARAIAAHQVVIV
SGETGSGKTTQLPKICLELGRGRRAMIGHTQPRRLAATSVAKRIAEELNTPMGEVVGYQV
RFNDRTGPNAAIKLMTDGILLAESQRDPLLKRYDTIIIDEAHERSLNIDFLLGYLRQLLP
RRPDLKVVITSATIDAERFARHFADARDRPAPVIEVSGRLYPVEVRYRPVQPPQTDEAAS
APARPGRERLAGDEERDLVDAIVDAVDECARHGPGDVLVFLPGEREIRESAEALRKRHPV
GTEILPLYARLSQAEQEQIFHPRGNSRRVVLATNVAETSLTVPGIRFVVDSGLARIKRYS
WRNKVEQLRIEPISRASANQRAGRCGRVGPGVCIRLYDETDFNARAPFTDPEVLRSSLAS
VILRMKALKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIEMSEDEGEGGKRLFTLTRIG
QDLARLPVDPRIGRMILAAREQQCLSEMLIIAAALSVQDPRDRPMQEREASEAAHAKFAD
DKSEFLSFLKLWRWYGEQVQHKASQRKLVALLRQNFLSPIRLREWHDVHTQLAALVGEQG
WRLNQSDATYEQLHLALLTGLLGNIGFKSEEGGNYLGARDIRFHIHPGSRLAKKAGRWVM
AAELVETTRLYARCVARIEPVWIERVAAHLLRRNWSDPRWEKKAGQVVANERATLYGLAI
YSGRRVQYGRINPEHARELFIRQALVPGEIDTRLAFVAHNRKLIAGIEKLEHQARRPDIL
VDDELIYAFYDRQIPAGMSQTATLEKWVGGLDKETAARLMLTREELMRHEAAGVTTDVFP
KKVEWQGVSMALDYHFEPGSPRDGVTLSVPLFALNQIDAQRCEWLVPGMLKEKVHLLLKS
LPQKLRRHCVPLPDYAAGFYDRWFERAADPGMGLVEALIEDMWKQVQVRPIASDFKLETL
PAHLFMNFKVVDEHGRMLAAGRNLAQLKADLGKQAQATFQQLATRDSEVAQALAHENLTA
WTFGPLPEIMEIRRGGQSVIGYPALVDRGGHCDLDVFDDPDEARRHHRAGLLRLFRIGLR
EQVKFLEKNLTDLTKMSMFYMTLGTQDELRDQIIDCALAQACLGDPWPVNEQQFEARRQD
GKGRLGLLAQEVARLSMAILTEYAALQRKLPQAKPHAAAYADLQQQIGALMPKWFVRDIP
YAQLAHYPRYLKAAVARIDKLRADPARDARLVAEMAPLLTQYQRARAALKGAPDPRLDEF
RWLLEELRVALFAQELRTPMPVSVKRLMKTWEAMRR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaacgccccgtccggccgccgcgcgccggcccgcgcccaggcccgaccgcccg
gaacgcgccgaccgccccgaacgacccatccccgtcatcacctacccggaagacctgccc
gtcagcgcgcggcgccaggagatcgcgcgcgccatcgccgcccatcaggtggtgatcgtc
agcggcgaaaccggctcgggcaagaccacccagctgcccaagatctgcctggagctcggg
cgtggccgccgcgccatgatcggccatacccagccccggcggctggcggccacgtccgtg
gccaagcgcatcgccgaggaactcaacacccccatgggcgaggtggtgggctaccaagtg
cgcttcaatgaccgcaccgggcccaatgccgccatcaagctgatgaccgatggcatcctg
ctggccgagtcgcagcgcgatccgctgctcaagcgctatgacaccatcatcatcgacgag
gcgcatgagcgcagcctgaacatcgacttcctgctgggctacctgcggcagttgctgccg
cgccgccccgacctgaaggtggtcatcacttcggccacgatcgacgccgaacgctttgcc
cggcacttcgccgacgcgcgggacaggcccgcgccggtcatcgaagtgtccggccgtctt
tatccggtcgaagtccgttaccgcccggtgcagccgccccagaccgacgaagcggccagc
gcgccggcccgccccgggcgcgaacgcctggccggcgacgaagagcgcgacctggtcgat
gccatcgtcgacgcggtggacgaatgcgcccgccacggtccgggcgatgtgctggtcttc
ctgcccggcgagcgcgagatccgcgaatccgccgaagccttgcgcaagcgccatcccgtg
ggcaccgagatcctgccgctgtatgcgcgcctgtcgcaggccgagcaggaacagatcttc
cacccccggggcaacagccgccgtgtcgtgctggcgaccaatgtggccgagacctcgctg
accgtgccgggcatacgcttcgtggtcgacagcggcctggcgcgcatcaagcgctactct
tggcgcaacaaggtcgagcagttgcgcatcgagcctatcagccgcgcctcggccaaccag
cgcgccggccgctgcggccgcgtcgggccgggcgtgtgcatccggctctatgacgagacg
gacttcaacgcgcgcgcgccgttcaccgaccccgaagtgctgcgttcctcgctggcctcg
gtcatcctgcgcatgaaggcgctcaagctcgacgatatcgagcaattccccttcgtggag
gcgcctcccgggcgcgcggtggccgacggctaccacctgctgcaggaactcggcgccatc
gagatgtccgaggacgagggcgaaggcggcaagcgcctgttcaccctcacgcgcatcggc
caggacctggcgcgcttgccggtcgacccgcgcatcgggcgcatgatcctggccgcccgc
gagcagcaatgcctcagcgagatgctcatcatcgccgccgcgctgtcggtccaagacccg
cgcgaccgtcccatgcaggagcgcgaagcctccgaggccgcgcacgccaagttcgccgac
gacaaatccgagttcctgtccttcctgaagctctggcgctggtacggcgagcaggtccag
cacaaggcctcgcagcgcaagctggtggccttgttgcgccagaacttcctctcgcccatc
cgcctgcgcgaatggcacgacgtgcacacccagctggccgcgctggtgggcgagcagggc
tggcgcctgaaccagagcgatgccacctatgagcagctgcacctggcgctcttgaccggc
ctgctgggcaatatcggcttcaagagcgaagagggcggcaactacctgggcgcgcgcgac
atccgtttccacatccatcccgggtcgcggctggccaagaaggccggccgctgggtcatg
gcggccgaactggtcgagaccacccggctatacgcgcgctgcgtggcccgcatcgagccg
gtctggatcgagcgcgtggccgcccatctgctacgccgcaactggtccgatccgcgctgg
gagaaaaaggccgggcaggtcgtggccaacgagcgcgccacgctctacggcctggcgatc
tacagcggccgccgcgtgcaatacggccgcatcaaccccgagcatgcgcgcgagcttttc
atccgccaggccctggtgccgggcgagatcgatacgcgcctggccttcgtggcccacaac
cgcaagctcatcgccggcatcgagaagctcgagcaccaggcccgccgcccggacatcctg
gtcgatgatgagctgatctacgctttctatgaccgccagatcccggccggcatgtcgcag
accgccaccctcgaaaagtgggtcggcgggctggacaaagagacagccgcgcggctgatg
ctcacccgcgaagaactgatgcggcacgaggccgccggcgtgaccaccgacgtctttccc
aagaaggtcgagtggcagggcgtgagcatggccctggactaccacttcgagccgggctcg
ccgcgcgacggcgtgacgctgtcggtgccgctgttcgccctgaaccagatcgacgcccag
cgctgcgaatggctggtgcccggcatgctcaaggaaaaagtgcatctgctgctgaaatcg
ctgccgcagaagctgcgccgccattgcgtgccgctgcccgactacgcggcgggcttctat
gaccgctggttcgagcgcgccgccgatcccggcatgggcctggtcgaggcgctgatcgag
gatatgtggaaacaggtgcaggtgcgtccgatcgccagcgatttcaagctggagaccctg
ccggcccacctcttcatgaacttcaaggtggtggacgagcatggccgcatgctggcggcc
ggccgcaatcttgcccagctcaaggccgacctgggcaagcaggcccaggcgaccttccag
cagctggccacgcgcgacagcgaggtggcccaggcgctggcgcacgagaacctcaccgcc
tggaccttcggccccttgccggagatcatggaaatccggcgcggcggccagtccgtcatc
ggctatccggctctggtggaccggggcgggcattgcgacctggacgtcttcgacgacccg
gacgaggcgcggcgccaccaccgggccggcctgctgcgtctgttccgcatcgggctgcgc
gagcaggtcaagttcctggaaaagaacctgaccgacctcaccaagatgagcatgttctac
atgaccctgggcacgcaggacgagctgagggaccagatcatcgattgcgcgctggcccag
gcctgcctgggcgatccctggccggtcaatgagcagcagttcgaggcccggcgccaggac
ggcaagggccggctcggcctgctggcccaggaggtggcgcgcctgtccatggctatcctg
accgagtatgccgccctgcagcgcaagctgccccaggccaagccgcacgcggccgcctat
gccgacctgcagcagcagatcggcgcgctcatgcccaagtggttcgtgcgcgacattcct
tatgcccagctggcgcactacccacgctacctgaaggccgcggtcgcccgcatcgacaaa
ctgcgcgccgatccggcccgcgatgcgcgcctggtcgccgagatggcgccgctcctgacg
cagtaccagcgtgcccgcgcggcgctcaagggcgcgcccgacccgcgcctggacgaattc
cgctggctgctcgaagagctgcgcgtggcgctcttcgcccaggaactgcgcacgcccatg
ccggtgtcggtcaagcgcctgatgaaaacctgggaagccatgcggcgctag
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