Bordetella hinzii: ACR54_03365
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Entry
ACR54_03365 CDS
T04004
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhz
Bordetella hinzii
Pathway
bhz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACR54_03365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhz03400
]
ACR54_03365 (mfd)
Enzymes [BR:
bhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACR54_03365 (mfd)
DNA repair and recombination proteins [BR:
bhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACR54_03365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKQ56667
UniProt:
A0A0H4WGE1
LinkDB
All DBs
Position
3508235..3511699
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AA seq
1154 aa
AA seq
DB search
MHDSSTPAAVDTQLPSTPATLASLKPGTRYVQPCPPGSGDGWLLADLARQARKPIVVLAA
DPLQAQRLADEIPLFAPELRVRQLPDWETLPYDAFSPHQDLISERLHTLHALMTETVDIL
TVPVTTALYRLPPPAFLAAYTFSFRQRDKLDEAALRAQLTLANYNHVTQVTAPGEFCLRG
GLIDLFPMGSAVPYRLDLFDDEIESIRAFDVDTQRSLYPVGEVRLLPGREFPMDEAARNH
FRARFREVFEGDPSRALPYKDIGNGIAFAGVEYYLPLFFEQTATLFDYLNAGTLTVTLGN
IDEAIQRFSQDTASRYNFLKSDRERPVLPPAALFLDGEALYAGFKDFARLALTAEPPHPD
FVAAPDVAVARRAEDPVGKLRALVSRPGARILLCADSAGRRETLFQMLAEQGLAPAEQTD
NIGAFLLTPASFGLTIAPLAAGFGLTEGGLVFLTENDLYPGNAGARRRGKRAQEGSSNVE
AMVRDLAELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLQYANGSTLYVPVSQLHV
IARYSGADPEAAPLHQLGSGQWDKARKKAAKQVRDTAAELLALYAQRAAREGYAFNLPLS
DYEAFAEGFGFEETADQSSAIQAVIMDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVAN
GKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVI
GTHKILSKDVRFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLE
GIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVETIHNRRAR
LEELVPEARIGVAHGQMPERELEQVMKDFYQQRFNVLLCTTIIETGIDVPSANTIVIHRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITANAKKRLEAIQAMEELGSGFYLAMH
DLEIRGTGEILGDSQSGNIQEVGFSMYNEMLSEAVRALKAGEEPDLDAPFNLACEVNLHA
PALLPADYCPDVHGRLAIYKRLSHAQDEDDLIRIQEELIDRFGKLPEAAQTLLMTHRLRL
AAEPLGIVKIDVSETQALLQFGPKAAVDPLRIIELVQKHRHIKLSGQDRLRIEITAPQVS
ARADAVRAVLRSLK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcatgactcctcgactcccgccgcagtggatacgcagctgccttccacccccgccacc
ctggcctccctcaaacccgggacgcgctatgtccaaccttgcccccccggttcgggcgac
ggctggctgctggccgatctggcccgccaggcccgcaaacccatcgtcgtgctcgcggcc
gatccgctgcaggcccagcgcctggccgacgaaatcccgcttttcgcgccggagttgcgc
gtgcggcagcttcccgactgggaaaccctgccctacgacgccttttcgccgcaccaggac
ctgatctccgagcgcctgcacaccctgcacgcgctcatgaccgagacggtcgatatcctg
accgtgcccgtcacgacggccctgtaccgcttgccgccgccggccttcctggccgcctac
accttctcgttccggcagcgcgacaagctggacgaagcggcgttgcgcgcgcaactgacg
ctggcgaactacaaccatgtgacccaggtcacggcgccgggcgaattctgcctgcgcggc
gggctgatcgatctgtttcccatgggctcggccgtgccctaccgcctggacctgttcgac
gacgaaatcgaatccatccgcgcgttcgacgtcgacacccagcgcagcctctatcccgtg
ggcgaggtgcggttgctgcccgggcgcgaatttcccatggacgaggccgcgcgcaatcat
ttccgcgcgcgtttccgcgaggtcttcgaaggcgatccatcacgcgccctgccctacaag
gacatcggcaacggcatcgccttcgccggcgtggagtattacctgccgctgttcttcgaa
cagacggccacgttgttcgactacctcaacgccggcacgctcacagtgacgctgggcaat
atcgatgaagccatacagcgtttttcgcaggacacggccagccgctacaacttcttgaaa
agcgaccgggagcgtccggtgctgccgccggcggccctgttcctggacggcgaggccctg
tacgcgggcttcaaggattttgcgcgcctggcgctgacggccgagccgcctcatccggat
ttcgttgccgcgcccgacgtggccgtggcccgccgcgccgaagatcccgtaggcaagctg
cgcgccctggtctcgcgcccgggcgcccgtatcctgctgtgcgccgactcggcgggtcgg
cgcgaaaccctgttccagatgctggccgaacagggcctggccccggccgagcagacggac
aacatcggcgccttcctactgacgccggccagcttcggcctgaccatcgcgccgctggcg
gcgggcttcgggctgaccgaaggcggcctggtctttttgaccgagaacgatctctatccc
ggcaatgccggcgccaggcgacgcggcaagcgggcccaggagggcagcagcaatgtggag
gccatggtccgcgacctggccgaactgcgcgaaggcgatcccgtggtccatgcccagcac
ggcatcggccgctaccatggcctggtcaacatggacatgggcgaaggcgagatggagttc
ctccatctgcagtacgccaacggctccactctctatgtgcccgtgtcgcagctgcatgtg
atcgcgcgctacagcggcgccgatcccgaggccgcgccgctgcaccagctgggctccggc
caatgggacaaggcgcgcaagaaggccgccaagcaggtccgcgacaccgcggccgaattg
ctggcgctctatgcccagcgcgccgcccgcgaaggctatgccttcaaccttcccttgtcg
gactacgaagccttcgccgaaggtttcggcttcgaggagaccgccgaccagtcctcggcc
atccaggccgtcatcatggacatgacgtccggcaagcccatggacaggctggtctgcggc
gacgtgggcttcggcaagacggaggtggccctgcgcgccgccttcctggccgtggccaat
ggcaagcaggtcgccctgctctgcccgaccacgctgctggccgaacagcatgcgcagacc
ttctccgaccgctttgccgattggcccgtgcgcgtggtcgaactctcgcgcttccgctcg
gccaaggaggtcgccgccgccgtcgaaggcatcaacgacggccgggtcgacattgtcatc
ggcacccacaaaatcctgtccaaggacgtgcgcttcaagcgcctgggcctggtgatcatc
gacgaagagcaccgcttcggcgtgcgccagaaggagacgctcaaggccttgcgcgccgag
gtggacgtgctcacgctcaccgccacgcccattccgcgcacgctgggcatgtcgctcgag
ggcatacgcgacttctccgtcatcgccaccgccccgcagaagcgcctggccatcaagacc
ttcgtgcggcgcgaagacggcagcaccatacgcgaagccctgttgcgcgaactcaaacgc
ggcggccaggcctattttctgcacaacgaggtcgagaccatacacaaccgccgcgcgcgc
ctggaggagctcgtgcccgaggcgcgcatcggcgtggcccatggccagatgcccgagcgc
gaactcgaacaggtgatgaaggacttctaccaacagcggttcaatgtcctgctgtgcacc
accatcatcgaaaccggcatcgacgtgcccagcgccaacactatcgtgatccatcgcgcc
gaccgcttcggcctggcccagctgcaccagctgcgcggccgcgtcgggcgctcgcaccac
caggcctatgcctatctgctcacgcccggcgaggatgccatcaccgccaatgccaagaag
cgcctggaagccatccaggccatggaggagctgggctcgggcttctacctcgccatgcac
gacctggaaatccgcggcacgggcgagatcctgggcgactcccagtcgggcaatatccag
gaagtgggcttctccatgtacaacgagatgctcagcgaagccgtgcgggccttgaaggcc
ggcgaggagcccgacctggacgcgccgttcaatctggcctgcgaagtcaatctgcatgcg
ccggccctgctgccggccgactactgccccgatgtacacggccgcctggccatctacaag
cgcttgtcgcacgcccaggacgaggacgacctcatccgcatccaggaagaactgatcgac
cgcttcggcaagctgcccgaggccgcgcagacgctgctgatgacgcatcgtctgcgcctg
gccgccgaaccgctgggcatcgtcaagatcgatgtcagcgagacccaggcgctgctgcag
ttcggccccaaggccgcggtggatcccttgcgcatcatcgaactggtgcaaaagcaccgc
catatcaaactttccgggcaggacaggctgcgcatcgagatcaccgcgccgcaggtcagc
gcgcgcgccgatgcagtgcgcgccgtgctgcgctcgctaaaatag
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