Bordetella hinzii: ACR54_03427
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Entry
ACR54_03427 CDS
T04004
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bhz
Bordetella hinzii
Pathway
bhz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bhz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACR54_03427 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhz03021
]
ACR54_03427 (rpoD)
Transcription machinery [BR:
bhz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACR54_03427 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
SHOCT
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AKQ56724
UniProt:
A0AAN1VGR0
LinkDB
All DBs
Position
complement(3566823..3569087)
Genome browser
AA seq
754 aa
AA seq
DB search
MTKSTGKTSSAIEAADATPTTAKKRAVSMAAEKAPAKTAVKVAKTATKTAAKKAAKPAAA
AGEKTTKARAKKAEDKLADLVGAAARVPSGRRPGRPAKNANNDSDTFDDPMDGEGEVVPD
FKPVKRGGKRGKGDPKELLARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPD
DLVDAEAIDGIISTFSDMGISVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDS
DFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHAT
RVREGQAQIDEVVDGLVDPEDGEEYAGAGVSADEDEGDDGPAGGMSSKQLEDLRVKALAK
FDEVSKQFDRMRQSYEKDGYRSDAYVKAQETIQNELMGIRFTAKMVEKLADTLRSQVEEV
RQLERAVLHTCVDRAGMPRSHFLKVFPGNETNLQWIVEEVAAGHPYAETLERQIPAVQEL
QQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
NKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLG
DFIEDTSTLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQF
DVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccaccggcaaaacctcctctgcaatcgaagcggcagacgccacccccacg
acggccaagaagcgcgccgtcagcatggcggcggaaaaagcgcctgcgaagacggcggtg
aaggtcgccaagaccgcaaccaagaccgcggccaagaaggccgccaagccggctgccgcc
gcaggcgagaaaaccaccaaggcgcgcgccaagaaggccgaagacaagctggccgacctg
gtgggcgccgccgcgcgcgtgccgagcggccgccgtccgggacgccccgccaagaacgcc
aacaacgatagcgacactttcgacgatccgatggacggcgaaggcgaagtcgtgcctgac
ttcaagcccgtcaagcgcggcggcaagcgaggcaagggggatcccaaggagctcctggcc
cgtggccccgtctcgcccgaagagtacgaagcgcgccgcaaccgcctgaagcagctcatc
aagctgggcaaggaccgcggctacctcacctacggcgaaatcaacgaccacctgcctgac
gacctggtcgatgccgaagccattgacggcatcatcagcacgttcagcgatatgggcatt
tcggtctatgaccaggcgcccgatgccgaaacgctgctgatgagcgagaacgcgcccgtg
gcgtccaacgacgacgacgtcgaggacgaagccgaggccgcgctcaccaccgttgactcc
gatttcggccgcaccaccgatccggtgcgcatgtatatgcgcgaaatgggctcggtcgaa
ctgctgacgcgcgaaggcgaaatcgaaatcgccaagcgcatcgaagacggcctgaagcat
atggtcatggccatctcggcgtgtcccaccaccatcaacgagatcctcgcgcatgcgacc
cgcgtgcgcgaaggccaggcccagatcgatgaagtcgtcgacggcctggtcgatcccgag
gatggcgaagaatatgcgggcgccggcgtcagcgccgacgaggacgagggcgatgacggt
ccggccggcggcatgtccagcaagcagctggaagacctgcgcgtcaaggccctggccaag
ttcgacgaggtctccaagcaattcgaccgcatgcgccagtcctatgaaaaggacggctat
cgctccgatgcctacgtcaaggcccaggaaaccatccagaacgaactgatgggcatccgc
ttcacggccaagatggtcgagaaactggccgacaccctgcgcagccaggtggaagaagtc
cgccagctcgaacgtgccgtgctccacacctgcgtggatcgcgccggcatgccgcgctcg
cacttcctcaaggtgttcccgggcaatgaaaccaacctccagtggatcgtcgaggaagtg
gctgccggccacccctatgccgagaccctggagcgccagatcccggccgtgcaggagctg
caacaaaagctcatcgacctgcagacgcgcgtcgtcctgccgctgaaggacctgaaggac
gtcaacaagcgcatggccaccggcgaagccaaggcccgcaaggccaagcgcgaaatgacc
gaggccaacctgcgcctggtgatctccatcgccaagaagtacacgaaccgtggcctgcag
ttcctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtggacaaattcgaa
taccgccgtggctataagttctcgacctatgccacctggtggatccgccaggccatcacc
cgttccatcgcagaccaggcgcgcaccatccgtatcccggttcacatgatcgagacgatc
aacaagatgaaccgcatcagccgccagattctgcaggaaaccggcgccgaaccggatccc
gcgaccctggcgcagaagatggacatgcccgaggacaagatccgcaagatcctgaagatc
gccaaagagccgatctccatggaaacgccgatcggcgacgatgacgactcccacctgggc
gacttcatcgaagatacgtccacgctggcgccgtccgatgccgctttgcacggttccatg
cgcgatgtggtcaaagaagtgctagactccctcaccccgcgtgaagccaaggttttgcgc
atgcgtttcggtattgaaatgagtaccgaccagacgctcgaggaagtcggcaagcaattt
gacgtcacccgcgaacggatccgtcagatcgaggccaaggcgctgcgcaagctgcgtcat
cccagccgcgccgacaagctcaagagcttcctcgaagggcagtaa
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