Bizionia sp. M204: GMA17_06770
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Entry
GMA17_06770 CDS
T08096
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bia
Bizionia sp. M204
Pathway
bia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMA17_06770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bia03019
]
GMA17_06770
03009 Ribosome biogenesis [BR:
bia03009
]
GMA17_06770
Enzymes [BR:
bia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GMA17_06770
Messenger RNA biogenesis [BR:
bia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMA17_06770
Ribosome biogenesis [BR:
bia03009
]
Prokaryotic type
rRNA helicases
GMA17_06770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UPS91443
LinkDB
All DBs
Position
1519068..1520915
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AA seq
615 aa
AA seq
DB search
MNTFQDLGLNDDLLQAITDMGFETPSDVQSQAIPILLEKDTDLVALAQTGTGKTAAFGFP
MLQKIQMDSRTTQGLILSPTRELCLQIANEMKAYGKHCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMIKRRLVDISKIEYAVLDEADEMLNMGFKEDITDILSHTPEDKNT
WLFSATMPKEVSNIAKKFMANPIEITVGNKNESTSQVTHEYYLVNARDRYAALKRLSDAN
PDIFSVIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDLVMKSFRNQQIQMLVATD
VAARGIDVDDITHVINYQLPDEPEVYTHRSGRTGRAGKTGISMVIVSKSEVRKIKSIERI
IKKDFIKKEIPDGIEICEVQLMSLANKIHNTEINPEINKYLESINELFADTSKDELIKKF
FSVEFTRFFNYYSKSRIQNVTESRGSDRSDDGGGRGYTSNANDTRYFINVGRKDGYDWMK
LKDFLKEVLELGRDDVFKVDVKESFSFFTTEKGLQEKVLAFFTDFKHEGRFVNVEVSEDK
GRGTSRNKRRSGGSGFGGKRRDDKPRGERRSSGGRSDRGGDSGNRRSRRSDSDSKPRRTE
TSNDSGSERPRRSRR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaatacattccaagatttaggtcttaatgacgacctattacaagctattactgacatg
ggttttgaaacccctagtgatgttcaatcccaagcaattcccattttattagaaaaagac
accgatttagttgccttagcgcaaactggaacgggaaaaacagctgcatttggttttcca
atgttgcaaaaaatccagatggatagtcgcacaacacaaggtttaatcctttcgccaaca
cgtgaattgtgtttgcaaattgccaacgaaatgaaagcttacggtaaacactgtaaaggt
ttaaacgttgtagcaatttacggtgggtctagtattacagatcaagcacgcgaggttaaa
agaggtgcacaaattattgttgctacacctggtcgtatgaaagatatgattaagcgtaga
ttagtagatatttctaaaattgaatacgccgttttagatgaagctgatgaaatgctaaac
atgggttttaaagaggatattactgatatcttatcgcatacacctgaagacaaaaacacc
tggttattctcggctaccatgcctaaagaggtttccaatattgccaagaaatttatggca
aaccctattgagattacagtaggaaataaaaatgaaagtacgagtcaagtaacgcatgag
tattatttagttaatgcacgtgatcgttatgcagctttaaaacgtttatccgatgcaaat
ccagatatcttttctgttattttctgtagaacaaaacgcgatacacaaaaagtagctgaa
caattaattgaagacggctacagtgctggcgcattacatggcgatttaagtcagaatcaa
cgtgatttggtaatgaaatctttcagaaaccagcaaattcaaatgctagtggcaacagat
gttgctgctcgtgggattgatgtagacgatattacacacgtaataaactaccagttaccg
gatgaaccggaagtatacacacaccgatctggtagaactggtcgtgctggaaaaacagga
atctctatggttattgtttcaaaaagcgaggttcgtaaaattaaaagtattgaacgcatc
attaagaaagacttcattaaaaaagaaattcctgatggcatagaaatttgtgaagttcaa
ttaatgtcgcttgccaataaaatccacaacacagaaataaaccctgaaattaataagtat
ttagaaagtatcaacgaactatttgctgacacatctaaagatgaattaattaagaaattt
ttctctgtagaatttacgcgtttctttaattactattcaaaatcacgtattcaaaacgta
acagaatctcgtggaagtgatcgttctgatgatggtggtggacgtggttataccagtaat
gccaatgatacacgttactttataaacgttggtcgtaaagatggttacgattggatgaag
ctaaaagatttccttaaagaagttttagaattaggtcgtgatgacgtttttaaagtggat
gttaaagaaagtttctcattttttacaaccgaaaaaggtttacaagaaaaagtattggca
ttctttacggatttcaaacacgaaggtcgttttgtaaatgtagaagtaagcgaagataaa
ggtcgtggtactagccgaaacaaacgcagaagtggcggaagtggttttggaggaaaacga
cgtgatgataagccaagaggtgaacgtcgttcaagtggtggacgtagtgatcgtggtggc
gattctggaaacagacgtagccgcagaagtgatagcgactctaaaccaagacgtacagaa
actagtaacgattccggttctgaaagaccaagacgctctagacgctaa
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