Bizionia sp. M204: GMA17_07915
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Entry
GMA17_07915 CDS
T08096
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bia
Bizionia sp. M204
Pathway
bia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMA17_07915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bia03019
]
GMA17_07915
03400 DNA repair and recombination proteins [BR:
bia03400
]
GMA17_07915
Enzymes [BR:
bia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GMA17_07915
Messenger RNA biogenesis [BR:
bia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMA17_07915
DNA repair and recombination proteins [BR:
bia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GMA17_07915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
UPS91647
LinkDB
All DBs
Position
complement(1757740..1759941)
Genome browser
AA seq
733 aa
AA seq
DB search
MSVNENDLHSALKTYFGFSAFKGLQEPVIKSLLSGKDTFVIMPTGGGKSLCYQLPALMQE
GTAIVVSPLIALMKNQVDAIRGVSDHHGVAHVLNSSLNKTEIKQVKHDITAGITKLLYVA
PESLTKEENVEFLRSVKISFMAVDEAHCISEWGHDFRPEYRNLKSIIERIGDNIPIIGLT
ATATPKVQEDILKNLGIHDAMTFQASFNRPNLYYEVRPKTKNVDADIIRFVKKYEGKSGI
VYCLSRKRVEELAQTLQVNGIKAVPYHAGLDAKTRASHQDMFLMEDADVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGYCLAFYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSISRRKFILHYFGEAFDSETGDGADMDDNMRHPKKQHEAKKNVV
LLLETVSKTNEKYKSKDLVQVIIGKENALIISHKTNEQPFFGLGSSESDKYWMALTRQVL
VAGLLKKDIETYGVIKLTPAGLAYLENPKSFMMTEDHLFNAEVDDAIITASKGGGAVADV
TLMNMLKDLRKRNAKRLGVPPFVIFQDPSLEDMALKYPISIEEMSHVHGVGDGKAKKYGK
DFVDLITRYVEENDIVRPDDMIVKSTGMNSALKLYIIQNIDRKLPLDDIASAKGMSMSEF
IKEMEAIVFSGTKLNINYWIQDILDEDQQEEIHDYFMEADTDKIDVAIDEFDGDYDDEEL
RLYRIKFISEVAN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaatgaaaatgacttgcacagcgcattaaaaacctattttggatttagtgca
tttaaaggcttgcaagaaccagtaataaaaagtcttttatcgggtaaagatacatttgta
atcatgccaacgggtggcggaaaatcattatgttaccagttgccagcgttgatgcaagag
ggtactgccatagtcgtgtctcctttaattgctttaatgaaaaatcaagtagatgctatt
cgtggtgtttctgatcaccatggtgttgcccacgttttaaattcgtctttgaataaaacc
gaaataaaacaagttaaacacgatataacagccggcataaccaagttgctatatgtagca
cctgaatcgcttactaaagaggaaaacgttgagtttttacgatctgtaaaaatctcgttt
atggccgttgatgaagcccattgtattagtgaatggggtcatgatttccgaccggaatac
cgaaatttaaaaagtattattgaacgtataggcgataacattccaattattggcttaaca
gctacggccacaccaaaggttcaagaagatattcttaaaaatttgggaattcatgatgct
atgacctttcaagcatcctttaatagacctaatttgtattacgaagtccgcccaaaaacc
aaaaatgtggatgcggatattattcgctttgtaaagaaatacgaaggaaagtcgggaatt
gtatattgcttaagtcgcaagcgtgtagaagaactagcccagaccctgcaagtaaatggt
attaaagctgtgccgtatcacgcgggattggatgctaaaacgcgggccagccatcaagat
atgtttctcatggaagatgcggatgttgtggttgcaaccattgcttttggcatgggcatt
gacaagccggatgtccgttttgtaatacaccatgatataccgaagagtatagaaagttat
taccaagaaacgggtcgtgctggtcgtgatggcggcgaaggctattgtttagcattctac
gcctataaagatattgaaaagttagagaaatttatgtcaggcaagcctgttgctgaacag
gaaataggtcatgccttgcttcaggaagtggttgcttatgccgaaacatctatatccaga
cgaaaatttattcttcattattttggtgaagcatttgattctgaaactggcgacggtgct
gatatggatgataatatgcgtcatcctaaaaagcagcatgaagccaagaagaatgttgtt
ttactgctagaaaccgtttccaaaacgaatgaaaaatataaatctaaagatttagtacaa
gttataataggtaaagaaaatgccttaattatttctcataaaaccaacgagcagccattt
tttgggctgggtagttcggaaagtgataaatattggatggctttaacacgccaagtatta
gttgctggtttgcttaaaaaagatattgaaacctatggtgttataaaattaacgccagca
ggtttggcctatctggaaaatccgaagtcgtttatgatgacggaagatcacttatttaat
gccgaagtagatgacgccattattaccgcctctaaaggtggtggagccgttgccgatgtg
acattgatgaacatgcttaaagatttaagaaaacgaaatgccaaacgtttaggggtgccg
ccatttgttattttccaagacccatcattagaagatatggctttaaaatatccaatttct
attgaagaaatgagccatgtacatggtgtaggagatgggaaagctaaaaagtatggtaaa
gactttgtggatttaattacacgctatgtggaggagaatgatattgtgcgaccggatgat
atgattgtgaaatcgacaggcatgaattcggcactcaagctatacattattcaaaatata
gacagaaagctaccgcttgacgatattgcatcggcaaaaggaatgtctatgagcgaattt
atcaaggaaatggaggctatagttttctctggaactaaattgaatattaattattggatt
caggatattttggatgaagatcagcaagaagaaattcatgattatttcatggaagccgat
acggataaaatagatgttgctatagatgaatttgatggggattatgacgatgaagaattg
cgtttataccgtattaagtttattagtgaggtggcgaattag
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