Bizionia sp. M204: GMA17_09160
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Entry
GMA17_09160 CDS
T08096
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bia
Bizionia sp. M204
Pathway
bia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMA17_09160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bia03019
]
GMA17_09160
Enzymes [BR:
bia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GMA17_09160
Messenger RNA biogenesis [BR:
bia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMA17_09160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
CMS1
AAA_22
LytB_SH3
DUF6256
Motif
Other DBs
NCBI-ProteinID:
UPS91873
LinkDB
All DBs
Position
complement(2018652..2019953)
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AA seq
433 aa
AA seq
DB search
MSFKTLGLSDALLKAVSKQGYETPSPIQQKAIPAVLEGRDVLASAQTGTGKTAGFTLPLL
QILSQTQASNRRPIRALILTPTRELAAQVYENVKSYSEFTDLRALVIFGGVNQKPQVASL
NRGVDILVATPGRLLDLQNQGVISLKQVEILVLDEADRMLDMGFLRDIERIMALMPAKRQ
NLLFSATFSKDIKKLANGILRKPVMVEATPENSTVDAITQKVYRVAKAKKTDLIIKLILD
GNWNQVLVFTRTKHGANKLCKKMISSGITAAAIHGNKSQGARTKALAGFKSSKISVLVAT
DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEAISLVSADETTFLRDIEK
LVGERIPVTILEGFEPDPNASTQPIKQGQGRSKQRSPKKNQSNSRKPSDNSSRKSNRSNE
SRTSNRRPKSRRD
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaaacattaggtttgtctgacgcccttttaaaagcggtcagtaagcaaggt
tatgaaacaccttcgccaattcagcaaaaagcaattccagcagttcttgaaggacgggat
gtattagcatccgcgcaaacgggaacaggaaaaacggcaggttttacacttccgttatta
caaatactatcacaaacacaagcttctaatcgaagacctattcgtgccttaattttaaca
ccaacacgggaattagcagcacaagtctatgaaaatgttaagtcatatagtgaatttaca
gatttacgtgctttagttatttttggaggtgtcaaccaaaaaccgcaagtagcctctctt
aatcgtggcgttgatattttggtagcaacaccaggacgcctattagatttacaaaatcaa
ggtgttatttcattaaagcaggttgaaattcttgtacttgatgaggctgacagaatgtta
gatatgggttttttacgtgatattgaacgtattatggccttaatgccagctaaaagacaa
aatttattgttttcggccacgttttcaaaagacattaaaaaactggcaaatggtatttta
cggaagcctgtaatggttgaagcaactccagaaaactcgaccgtggatgctattactcaa
aaggtttatcgcgttgctaaagccaaaaaaacagatttaattattaaactgattttagat
ggtaattggaatcaagttcttgtatttacacgtacaaaacatggtgccaataaactatgt
aaaaaaatgataagcagcggtattacggctgccgctattcatggaaataaaagtcaaggt
gcaagaaccaaggcattagctggttttaaatctagcaaaataagtgttttggtagcaacc
gatattgcagcacgtggtttggatattccactattaccacatgttattaattttgaatta
ccgaatatttcagaagattatgttcaccgtattggtagaacaggtagagcaggagcaagt
ggtgaggctatttcattagtaagtgctgatgaaacaacatttttacgcgatattgaaaaa
ttggtcggtgagcgaattcccgtaactattttagaaggttttgaaccagatcctaatgca
tctacacaacctataaaacaaggccaaggtagaagtaaacagcgaagccctaaaaaaaac
caatctaattctagaaaaccttcagataattcgtctagaaaatcaaatagatctaatgag
agtcgtacgtccaatagacggccaaaaagtagaagagattag
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