Bradyrhizobium icense: LMTR13_00425
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Entry
LMTR13_00425 CDS
T04485
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bic
Bradyrhizobium icense
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bic03016
]
LMTR13_00425
Enzymes [BR:
bic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LMTR13_00425
Transfer RNA biogenesis [BR:
bic03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LMTR13_00425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ANV98873
UniProt:
A0A1B1U7W0
LinkDB
All DBs
Position
76368..76982
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AA seq
204 aa
AA seq
DB search
MTIRLHRGDLPDLSRYKDSVAIDTETMGLNPHRDRLCVVQMSNGDGSADVIQIPQGHTDA
PNLKALLANPNITKIFHFARFDVAVLYKTFGVMPQPVYCTKIASRLSRTYTDRHGLKDLV
REVLNIDLSKQQQSSDWGSASLSEAQLAYAASDVLHLHGLRERLDAMLAREERTAMAQAC
FDFLPTRAKLDLSGWEAEDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgcctgcatcgcggcgacctgcccgatctgtcccgctacaaggactcggtt
gcgatcgataccgagaccatgggactcaatccgcaccgcgaccggctctgcgtggtgcag
atgtcgaacggcgacggcagcgccgatgttatccagattccacaaggccataccgatgcg
ccgaacctgaaggcgctgctggccaatccgaacatcaccaagatcttccacttcgcgcga
ttcgatgtcgcggtgctgtacaagaccttcggcgtgatgccgcagccggtctactgcacc
aagatcgcctcgcggctgagccgcacctataccgaccggcacggcctgaaggatcttgtg
cgcgaggtgctcaacatcgatctgtcgaaacagcagcagtcgagcgactggggatcagct
agcctgagcgaggcgcagctcgcctatgccgcctccgacgtactgcatctgcatggcctt
cgcgagcggctcgatgccatgctggcgcgcgaggagcgcacggcgatggcgcaagcctgt
ttcgacttcctgccgactagggccaagctcgatttgagcggctgggaggccgaggacatc
ttcgcgcattcgtga
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