Bradyrhizobium icense: LMTR13_08600
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Entry
LMTR13_08600 CDS
T04485
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bic
Bradyrhizobium icense
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bic03032
]
LMTR13_08600
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_08600
Enzymes [BR:
bic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LMTR13_08600
DNA replication proteins [BR:
bic03032
]
Prokaryotic type
DNA Topoisomerases
LMTR13_08600
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LMTR13_08600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
SAM_3
DUF4058
Motif
Other DBs
NCBI-ProteinID:
ANW05402
UniProt:
A0A1B1URI4
LinkDB
All DBs
Position
1823109..1824248
Genome browser
AA seq
379 aa
AA seq
DB search
MDSPDAAQTIVDPRDAAESAGLRYVSDERPGIRRKKLGTGFSYVRPDGSKLTGPDALKRI
KALAIPPAWTDVWVCPSPDGHIQATGRDAKGRKQYRYHTRFREVRESTKYERVVAFADAL
PSIRDTVREHMALRGLPREKVLATVVHLLETTLIRVGNDDYARQNNSYGLTTLKNRHAAV
EGNEVRFRFTGKGGKQWSLRVRDRRITKIIKACQELPGQELLQYIDEQGNCQDVTSTDVN
EYLKAITGKDITAKDFRTWAGTVLAAMTLSELQSFDNAAQAKRNLRSAIEKVSARLGNTP
TICRKCYIHPEVLNSYLDGNLVLEIKSQVENELRSAVENMKPEEAAVLALLRGRLAKQAE
QSGRTDLKESSSKRRAHAA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atcgattcacccgatgccgcgcagacgatcgtcgatccgcgtgatgcggccgaatctgct
ggcctgaggtatgtgtccgacgaacggcccggaattcgacgcaagaagctagggaccggg
ttcagctacgtacgacccgacggctcgaagctgaccggacctgacgcgctgaagcggatc
aaggcactcgcgatcccgccagcatggaccgacgtgtgggtctgcccatctccggatggc
catatccaagcaactggccgagacgcaaaaggacgtaagcaataccgctaccatacgcgc
ttccgggaagtacgcgaaagcacaaagtatgagcgtgtggtcgcctttgcagacgcgctt
ccttccatccgggacaccgtgcgcgagcacatggcattgcgcggcctgccgcgcgaaaaa
gttctggcaaccgtcgtgcatctcctggagaccaccttgatccgggtaggtaatgacgat
tacgccagacagaacaacagctatggcctgacgacgttgaagaaccggcacgcagcggtc
gagggaaacgaggttcgctttcgattcacgggcaaaggcggcaaacaatggtcgctgcgc
gtacgagaccggcgcatcaccaagatcatcaaggcctgccaggagctccccggacaggaa
ctccttcaatacatcgatgagcaaggtaattgccaggacgtcacatcgactgacgtgaac
gagtatctcaaggcaatcaccggaaaggatatcacggcaaaggatttccgaacctgggca
ggaacggtgctggcggccatgaccctgagcgaacttcagagcttcgacaacgccgcacag
gccaagcgcaatctgcgcagtgcaatcgaaaaagtctccgcgcgactcggcaacacacct
acgatctgcaggaagtgctacatccacccggaggtacttaactcttatctggatggaaat
ttggtccttgagatcaagtcacaagtcgagaatgagcttcggagcgctgtcgaaaatatg
aaacctgaggaagccgccgtgctcgcgctactccgcggtcggctcgccaaacaggcagag
cagtcgggacggaccgatctcaaagagtcgtctagcaagcggcgggcgcacgccgcttga
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